FastQCFastQC Report
Wed 28 Jun 2023
SRR1585556.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585556.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32717625
Total Bases937.4 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTGGGCTGCAGGTCGACCCGTGC1644780.5027198642933282No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC816560.24957801796432352No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT592120.18097890662907226No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC573600.17531834905498184No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC568000.1736067333738314No Hit
CCTCTAGCATCACCAGTATTAGAGGC462000.14120829369491214No Hit
ACCTCTAGCATCACCAGTATTAGAGGC439600.13436183097031035No Hit
GGAGAGCGACGCTCAGACAGGCGT388560.11876167661925338No Hit
TCGACTGCCTAATTTGTGGTCGTGGGGG370510.11324477250411666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)