FastQCFastQC Report
Wed 28 Jun 2023
SRR1585916.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585916.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16704810
Total Bases584.6 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA790280.47308529698931023No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA498770.29857867284931705No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA425430.25467515045067857No Hit
CCCACTAATAGGGAACGTGAGCTGGGTTTAAAAAA397390.23788956593939112No Hit
CCCCACTAATAGGGAACGTGAGCTGGGTTTAAAAA328010.19635661824348796No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA275920.16517398282291149No Hit
ACTATGCCGACTAGGGATCGGGTGGTGAAAAAAAA265390.1588704091815471No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAA220980.13228525197233612No Hit
TGGCGCCAGTGAAATACCACTACCTTTAAAAAAAA205490.1230124736527982No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA205420.12297056955451753No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA204770.1225814600704827No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA199800.11960626909255478No Hit
AGCCATGCATGTCTAAGTATAAGCAAAAAAAAAAA190290.11391329802613738No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTAAAAAAA187420.1121952299966297No Hit
CACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA183720.10998029908750834No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA180040.1077773407778957No Hit
TCACGTTCTAGCATTCAAGGTCCAAAAAAAAAAAA172270.10312598586874079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)