FastQCFastQC Report
Thu 29 Jun 2023
SRR1585917.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585917.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18129494
Total Bases634.5 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA2870471.5833150114393706No Hit
TCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAA1987571.0963185183215813No Hit
CACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA1093410.6031111513647319No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCAAAAAAAA953620.5260047522561855No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA818040.4512205359951028No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCAAAAAAA626050.34532127592750245No Hit
CCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA607690.33519413172811113No Hit
AGCCATGCATGTCTAAGTATAAGCAAAAAAAAAAA596010.3287515911916792No Hit
GCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA485290.2676798370655022No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCAAAAAAAA484550.26727166240822825No Hit
TTTCCACGTTCTAGCATTCAAGGTCCAAAAAAAAA468060.2581759865995157No Hit
TTTCGGTGCCCGAGTTGTAATTTGAAAAAAAAAAA437500.24131947642885124No Hit
ACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAA437020.24105471448899787No Hit
TTGTGGCGTCGCTGAACCATAGCAAAAAAAAAAAA396550.21873197343511078No Hit
TCACGTTCTAGCATTCAAGGTCTCAAAAAAAAAAA384770.21223427416120935No Hit
TGCTCTGCTAGGCGGACTACTTGCGTGCCAAAAAA369550.2038391143183588No Hit
CCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAA366170.20197474899189133No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA347350.19159387460014052No Hit
GCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAA324500.17899010308837082No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA316780.17473184855572912No Hit
CCCACTAATAGGGAACGTGAGCTGGGTTTAAAAAA314860.17367280079631567No Hit
TTCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAA311830.17200149105099127No Hit
ACTATGCCGACTAGGGATCGGGTGGTGAAAAAAAA291340.16069946574350064No Hit
TGGCGCCAGTGAAATACCACTACCTTTAAAAAAAA288100.15891232264949037No Hit
AGAGGTGCACAATCGACCGATCCTAAAAAAAAAAA287440.158548274982192No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAA278640.15369430608488027No Hit
TCCACGTTCTAGCATTCAAGGTCTCAAAAAAAAAA276680.152613194830479No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTAAAAAAA275860.1521608931832295No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA268600.14815636884294728No Hit
AAGAGGTGCACAATCGACCGATCCTAAAAAAAAAA251150.13853116915452798No Hit
TCCACGTTCTAGCATTCAAGGTCCAAAAAAAAAAA245630.13548640684621424No Hit
GGCGCCAGTGAAATACCACTACCTAAAAAAAAAAA243640.13438874797057215No Hit
TTCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAA242720.1338812875858532No Hit
CCCCACTAATAGGGAACGTGAGCTGGGTTTAAAAA234810.12951823145201957No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAAAAA228570.12607632623392578No Hit
GTTTTCATGCCAGGTCGTACTGATAAAAAAAAAAA226410.12488489750458562No Hit
TCACGTTCTAGCATTCAAGGTCCCTAAAAAAAAAA223230.12313084965305705No Hit
TTTTCCACGTTCTAGCATTCAAGGTCAAAAAAAAA207540.11447644374410008No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA206790.11406275321307918No Hit
AAGCCATGCATGTCTAAGTATAAGCAAAAAAAAAA205530.1133677531209641No Hit
TATACAGTGAAACTGCGAATGGCTCAAAAAAAAAA200240.11044985590883011No Hit
CACGTTCTAGCATTCAAGGTCTCAAAAAAAAAAAA198330.10939632402316359No Hit
GCTCTGCTAGGCGGACTACTTGCGTGCCAAAAAAA195100.1076146968029003No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA192510.10618608550244149No Hit
GATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA188880.10418382333230039No Hit
TTCGGTGCCCGAGTTGTAATTTGAAAAAAAAAAAA186390.10281037076931106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)