FastQCFastQC Report
Wed 28 Jun 2023
SRR1585920.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585920.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15202816
Total Bases532 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA728720.4793322500252585No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA562780.3701814190213181No Hit
CCCACTAATAGGGAACGTGAGCTGGGTTTAAAAAA411280.2705288283433806No Hit
CCCCACTAATAGGGAACGTGAGCTGGGTTTAAAAA382620.2516770577240427No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA284580.18718900498433974No Hit
ACTATGCCGACTAGGGATCGGGTGGTGAAAAAAAA236390.1554909301013707No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCAAAAAAAA221800.14589402384400363No Hit
CACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA220790.14522967323948405No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA220040.14473634358266257No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTAAAAAAA197110.12965361154144076No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA180840.1189516468527936No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAA173900.11438670309500555No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCAAAAAAAA168260.11067686407570808No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCAAAAAAA164950.10849963585693598No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA152860.10054716178897383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)