FastQCFastQC Report
Thu 6 Jul 2023
SRR1587297.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587297.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49439371
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2301250.4654691096292467No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1656870.33513169089469197No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1226870.24815647432084037No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1106460.22380139100070673No Hit
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN934960.18911243834392635No Hit
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATNNNNNNNNNNNNNNN659870.13347054921066856No Hit
GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN645350.13053361864170968No Hit
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN500700.10127556032215701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)