FastQCFastQC Report
Thu 29 Jun 2023
SRR1587298.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587298.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37740522
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATGGGTTTCNNNNNNNN1780820.4718588683007617No Hit
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1670940.4427442736483613No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1128320.29896777792315643No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1010730.26781028624882297No Hit
GCCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCNNNNNNNN969680.2569333831683621No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN844640.22380188594105827No Hit
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN704250.18660314237307052No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCGNNNNNNNN684450.18135679204437077No Hit
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATNNNNNNNNNNNNNNN644460.17076075418352718No Hit
GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN497280.13176288340685907No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCNNNNNNNN395240.10472563151087311No Hit
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN385010.10201501717437825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)