FastQCFastQC Report
Sun 2 Jul 2023
SRR1587299.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587299.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48991692
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1872140.3821341789950835No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1507140.307631751114046No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1180270.24091227549356736No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1146300.23397844679461163No Hit
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN919640.1877134596616912No Hit
TCGACCTATTCTCAAACTTTAAATGTGCAAACAAACCGCGCCTTGCGGCA771800.1575369146262595No Hit
GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN646060.13187133851184402No Hit
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN641470.13093444496670986No Hit
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATNNNNNNNNNNNNNNN609360.12438027247558628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)