FastQCFastQC Report
Thu 6 Jul 2023
SRR1587300.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587300.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48571354
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1629720.33553110337422337No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1391080.2863992632365159No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1325980.272996301482557No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1183050.24356949159786653No Hit
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1079910.2223347531139445No Hit
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATNNNNNNNNNNNNNNN915100.188403230430842No Hit
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN593020.12209254038913553No Hit
GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN591850.12185165766636853No Hit
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN537590.11068046404471245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)