FastQCFastQC Report
Wed 28 Jun 2023
SRR1587301.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587301.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences185469996
Total Bases9.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGGCCGTA44530672.400963549921034No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCCATAATGC29875261.6107866848716599No Hit
GCCAGAAGCCAGTCCCAAGACCAGATGCCCACTCGCCTTGGCCGTACAGC26717131.4405095474310574No Hit
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGCGGCAT22251961.199760634059646No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACGCCGTA21582901.1636868747223135No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACCGGCAT18759831.0114751930010286No Hit
CCAGAAGCCAGTCCCAAGACCAGATGCCCACTCGCCTTGGCCGTACAGCA18090930.9754100603959682No Hit
CCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGGCCGT13245550.7141613352922054No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCCAATTACG10672960.5754548029428975No Hit
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCAGGTATTACG9103980.4908599879411223No Hit
GGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTAC8944790.48227692850114684No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCACACGCAGGTATTACG8498770.45822883395112596No Hit
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCAGGTTAATGC8319860.44858252975861385No Hit
CCTCGAAGGCGCCATCATAGAGGTAGATCACAAGACACGCAGGTATTACG7335940.395532439651317No Hit
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATGGGTTTCGCGCGCCT6848200.3692349246613452No Hit
GACCTATTCTCAAACTTTAAATGTGCAAACAAACCGCGCCTTGGCCGTAC6451850.34786489131104525No Hit
CCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACCGGCA6135620.33081469414600084No Hit
CCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCCAATTAC5704970.3075953050648688No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACCGGC5552370.2993675591603506No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCGCCTTGGCC5161260.27828005129196204No Hit
GCCAGAAGCCAGTCCCAAGACCAGATGCCCACCGCCTTGGCCGTACAGCA4323360.2331029327244931No Hit
CCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCAGGTTAATG4253150.2293174147693409No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATACTTGCGGC4036820.21765353356669076No Hit
CCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATACTTGGCCGT3439630.1854547945318336No Hit
GCCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGGCCG3424730.184651430088994No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATAAGGTATTA3224040.1738308119659419No Hit
CCTCGAAGGCGCCATCATAGAGGTAGATCACAAGTGTGCGTCCATAATGC2987910.16109937264461904No Hit
CCAGAAGCCAGTCCCAAGACCAGATGCCCACTCGCCTTGGCCGTACAGTG2942550.15865369404547786No Hit
GACCTATTCTCAAACTTTAAATGTGCAAACAAACCGCCTTGGCCGTACAG2807110.1513511651771427No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACGCCG2732920.14735105725672198No Hit
GGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTA2648850.14281824861849893No Hit
CCTCGAAGGCGCCATCATAGAGGTAGATCACAAGACACGCCTTGCGGCAT2470350.1331940504274341No Hit
TCGACCTATTCTCAAACTTTAAATGTGCAAACAAACCGCGCCTTGGCCGT2464160.1328603037226571No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATAAGGTTAAT2423930.13069121972699024No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCCAATTA2379030.12827034298313136No Hit
GCCAGAAGCCAGTCCCAAGACCAGATGCCCACTCGCCTTGGCCGTACAGT2376540.12813608946214675No Hit
CCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATACTTGCGGCA2368950.12772685884998886No Hit
GCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTACA2343640.1263622176386956No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCCATAAT2277290.12278481959960791No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2252200.12143204014518877No Hit
ACGTTGCTTCACTTATCGAATGAAGAGACCAATGGGTTTCGCGCGCCTTG2100730.11326522053734234No Hit
GAACGTTGCTTCACTTATCGAATGAAGAGACCAATGGGTTTCGTATATTC2057120.11091389682242729No Hit
CCAGAAGCCAGTCCCAAGACCAGATGCCCACCGCCTTGGCCGTACAGCAG2027000.1092899144722039No Hit
AGCCAGAAGCCAGTCCCAAGACCAGATGCCCACTCGCCTTGGCCGTACAG1970410.10623874710171449No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCAGGTATTA1945940.10491939623484976No Hit
CCTCGAAGGCGCCAGACGCTCTTGCAGCTGTGGAGTGTATTCCATAATGC1924820.10378066757493218No Hit
CCTCGAAGGCGCCAGACGCTCTTGCAGCTGTGGAGTGTATTCCAATTACG1921700.10361244629562617No Hit
GTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCG1904700.10269585599171523No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCACACGCAGGTTAATGC1884770.1016212886530714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)