FastQCFastQC Report
Thu 29 Jun 2023
SRR1587305.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587305.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182299881
Total Bases9.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCCTTGGCCG49226102.700281521302803No Hit
GGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTAC27802401.5250915056823322No Hit
CGTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCC20177361.1068224449362092No Hit
GTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCG19313051.0594110042233105No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACGCCGTA17263330.9469742879316525No Hit
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGCGGCAT17200980.9435540991932957No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCCTTGATTA13460110.7383499059991158No Hit
CCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGGCCGT12647470.6937728061380358No Hit
CCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTACAGCAG12615480.6920180052119727No Hit
TGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGT11979430.6571276917070505No Hit
GCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTACA11592170.6358846718062311No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCGCCTTGGCC9425380.517026119177774No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACCGGC8961460.49157794019624185No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTGTGGAGTGTATTCCAATTA8706540.4775943874587608No Hit
GCCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATAAGGTTAAT8705410.4775324016805036No Hit
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACACGCCTTGGCCGTA8688110.4765834158717855No Hit
GGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTA8083300.4434067622896583No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCCTTGCGGC7117450.3904253782809655No Hit
CCGTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGC6091750.33416094221147624No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACATCGCCTTGGCC5601930.3072920272504182No Hit
GCCCGTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTG4891330.2683122980206443No Hit
CCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACCGGCA4490280.2463128322064017No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCAGGTCGGC4414960.2421811783848614No Hit
GGCACCCAACCGTGCTGACAAACTGAACCAAACGGGGCGCCTTGGCCGTA4112290.2255783151059764No Hit
CCCTCGAAGGCGCCATCATAGAGGTACTAGCACCTCACATAAGGTTAATG3803520.208640838333844No Hit
CCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGGCCGTACAGCA3788260.20780375605401522No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGGAACCGGCAT3628180.1990226203164664No Hit
GGATCTTTTATGGCGGCGACCCCGTCTCCACGCGCCTTGGCCGTACAGCA3563290.1954631007137081No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTGCGTCCATAATGC3561570.19536875067954654No Hit
ATATCGAATCGCCATCCAAATCATCTGGTACGCCTTGGCCGTACAGCAGC3318840.1820538763818502No Hit
TCGACCTATTCTCAAACTTTAAATGTGCAAACAAACCGCGCCTTGGCCGT3217620.17650148658078388No Hit
GGCCCGTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTT3195650.17529632945838292No Hit
GTGGGCACCCAACCGTGCTGACAAACTGAACCAAACGGGGCGCCTTGGCC3150420.17281525268795978No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGAAGGTTAAT3140760.17228535656586633No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGAAGGTCGGC3035300.16650038295965758No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGCGAGACGGAGCGGAACCGG2769340.1519112346540698No Hit
CCCGTGGGCACCCAACCGTGCTGACAAACTGAACCAACGGGGCGCCTTGG2765420.15169620434365505No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCAGGTTAAT2716870.14903301006543168No Hit
GCCCTCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2671360.1465365739871218No Hit
TATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCGCCTTGGCCG2590430.14209718546113587No Hit
GGCTCTGCCTGCCCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTG2565750.1407433721802594No Hit
CCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACATCGCCTTGGCCGT2542640.13947568073289088No Hit
CGTGGGCACCCAACCGTGCTGACAAACTGAACCAAACGGGGCGCCTTGGC2342200.12848061047280662No Hit
CCAACCGTGCTGACAAACTGAACCAAACGGGGCGCCTTGGCCGTACAGCA2207410.12108674936545899No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCATTCCAATT2085350.11439118822024903No Hit
GCCCTCGAAGGCGCCATCATATCTTGCAGCTACAAGACACGCAGGTATTA1963920.1077301855177843No Hit
CCTCGAAGGCGCCATCATAGAGGTACTAGTGTTCTGTAGCGGAACCGGCA1934970.10614214279163464No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGCGCCTTGGCCGTACAGCAG1868150.10247675367379971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)