FastQCFastQC Report
Wed 28 Jun 2023
SRR1587306.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1587306.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182381480
Total Bases9.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCGCCTTGGCC10158920.5570148898890391No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCGCCTTGCGG3476760.19063119786066No Hit
GCCCTCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2434920.1335069766952215No Hit
ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTCATTCCATAA1865300.10227463885039204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)