FastQCFastQC Report
Wed 20 Sept 2023
SRR15882955_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15882955_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112008136
Total Bases16.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA99594738.891740685694476RNA PCR Primer, Index 1 (100% over 32bp)
GGGATTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA64012815.715014309317673RNA PCR Primer, Index 1 (100% over 32bp)
TGGGTTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC50536464.5118561744478995RNA PCR Primer, Index 1 (100% over 31bp)
GGGGTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA34244953.0573627258648424RNA PCR Primer, Index 1 (100% over 32bp)
GTTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT24853502.2189013126689296RNA PCR Primer, Index 3 (100% over 34bp)
TGGGATTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC20029041.7881772445530206RNA PCR Primer, Index 1 (100% over 31bp)
GGGTTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA16509941.4739947105270994RNA PCR Primer, Index 10 (100% over 35bp)
GGCCTGGTTAGTACTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA16195801.4459485335958095RNA PCR Primer, Index 10 (100% over 35bp)
GATTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT16097491.4371714926137151RNA PCR Primer, Index 3 (100% over 34bp)
GGGTTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC15439061.3783873700031934RNA PCR Primer, Index 1 (100% over 33bp)
GGTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT15162611.3537061272049022RNA PCR Primer, Index 3 (100% over 34bp)
TGGGGTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC14101331.2589558672773555RNA PCR Primer, Index 1 (100% over 31bp)
AGCCGGATCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA13098541.1694275494415869RNA PCR Primer, Index 43 (100% over 40bp)
GGGTTTAGACCGTCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT11333161.0118157845247955RNA PCR Primer, Index 3 (100% over 34bp)
GGGATTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC10354410.9244337393490774RNA PCR Primer, Index 1 (100% over 33bp)
TGGGTTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA9815590.8763283052938226RNA PCR Primer, Index 1 (100% over 32bp)
TCCCTAGTATTGGAGGCACTGCCTGCTGGAATTCTCGGGTGCCAAGGAAC9813160.8761113567678691RNA PCR Primer, Index 1 (100% over 24bp)
GGGATTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA9151580.8170460045866668RNA PCR Primer, Index 10 (100% over 35bp)
GGGTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC9082220.8108535972779692RNA PCR Primer, Index 1 (100% over 33bp)
TGGGTTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT8377970.7479787004044064RNA PCR Primer, Index 3 (100% over 34bp)
GACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGC6991990.6242394748895741RNA PCR Primer, Index 43 (100% over 39bp)
GGCATGTTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGC6678950.5962915051099502RNA PCR Primer, Index 43 (100% over 39bp)
GGGGTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC6251950.5581692744177084RNA PCR Primer, Index 1 (100% over 33bp)
GGGATTAGACCGTCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT6138880.5480744720187112RNA PCR Primer, Index 3 (100% over 34bp)
AGCCGGATCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT5770060.5151465068573233RNA PCR Primer, Index 43 (100% over 41bp)
AGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAG5541630.4947524526254057RNA PCR Primer, Index 43 (100% over 38bp)
GTTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA5400950.482192650719587RNA PCR Primer, Index 10 (100% over 35bp)
TGGGGATCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT4954710.4423526876654746RNA PCR Primer, Index 43 (100% over 41bp)
TTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA4944530.4414438251164183RNA PCR Primer, Index 10 (100% over 35bp)
GGGGTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA4912210.43855832044200793RNA PCR Primer, Index 10 (100% over 35bp)
AAATGGATGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA4672930.4171955865777464RNA PCR Primer, Index 43 (100% over 40bp)
TGGGATTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA4259710.3803036236581957RNA PCR Primer, Index 1 (100% over 32bp)
AGAGGTGAAATTCTTGGACCTGGAATTCTCGGGTGCCAAGGAACTCCAGT4211620.3760101855458071RNA PCR Primer, Index 1 (100% over 30bp)
TGGGTTTAGACCGTCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC4191160.3741835325248159RNA PCR Primer, Index 1 (100% over 33bp)
GTTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA3780510.3375210172232489RNA PCR Primer, Index 43 (100% over 37bp)
TCCCTAGTATTGGAGGCACTGCCTGTGGAATTCTCGGGTGCCAAGGAACT3685510.32903949048844094RNA PCR Primer, Index 1 (100% over 25bp)
CGGGGAGAGTTCTCTTTTCTTTGTGATGGAATTCTCGGGTGCCAAGGAAC3592950.3207758050718744RNA PCR Primer, Index 1 (100% over 24bp)
GGGATTAGACCGTCGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC3436030.30676610849054753RNA PCR Primer, Index 1 (100% over 31bp)
GAAAATGGATGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAG3301950.294795549494726RNA PCR Primer, Index 43 (100% over 38bp)
GGGTTTAGACCGTCGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC3247460.28993072431809774RNA PCR Primer, Index 1 (100% over 31bp)
AGGGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTC3226280.2880397902523795RNA PCR Primer, Index 43 (100% over 44bp)
TGGGATTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT3112030.2778396383634132RNA PCR Primer, Index 3 (100% over 34bp)
TCCCAGCCTTCCTGTTAACTCTTAATATGGAATTCTCGGGTGCCAAGGAA2935560.26208453285929156RNA PCR Primer, Index 1 (100% over 23bp)
GGTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA2910920.2598846926619688RNA PCR Primer, Index 10 (100% over 35bp)
GGGGTTAGACCGTCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT2908450.2596641729668638RNA PCR Primer, Index 3 (100% over 34bp)
TGGGGTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA2875530.25672510075518085RNA PCR Primer, Index 1 (100% over 32bp)
CGGATAGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT2807860.250683575343134RNA PCR Primer, Index 43 (100% over 41bp)
GATTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA2702990.24132086262019392RNA PCR Primer, Index 10 (100% over 35bp)
TGGGTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA2530050.22588091279369207RNA PCR Primer, Index 1 (100% over 32bp)
CATTTGGTGTATGTGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC2434140.21731814196068758RNA PCR Primer, Index 1 (100% over 33bp)
TTTGGTGTATGTGCTTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA2308810.20612877621675627RNA PCR Primer, Index 1 (100% over 32bp)
TGGGGTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT2272860.20291918794184738RNA PCR Primer, Index 3 (100% over 34bp)
ATTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA2263610.20209335507556347RNA PCR Primer, Index 10 (100% over 35bp)
CGGCCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT2250420.20091576204785697RNA PCR Primer, Index 43 (100% over 41bp)
GACTGAACGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAG2188120.19535366609439872RNA PCR Primer, Index 43 (100% over 38bp)
GGGTTTAGACCGTCGTGAGATGGAATTCTCGGGTGCCAAGGAACTCCAGT2065800.18443303082911763RNA PCR Primer, Index 1 (100% over 30bp)
AGCAGAACTGGCGCTGCGGGATGGAATTCTCGGGTGCCAAGGAACTCCAG2040300.1821564104950376RNA PCR Primer, Index 1 (100% over 29bp)
GGCATGTTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA2017430.1801145945326686RNA PCR Primer, Index 43 (100% over 40bp)
GACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATC2016830.1800610269953961RNA PCR Primer, Index 43 (100% over 42bp)
ACTCTGGCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT1970390.17591489961050688RNA PCR Primer, Index 43 (100% over 41bp)
TGGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTC1952610.174327514922666RNA PCR Primer, Index 43 (100% over 44bp)
CCCTGAACGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT1944420.17359631803889675RNA PCR Primer, Index 43 (100% over 41bp)
GGGTTAGACCGTCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACT1920290.17144201024825553RNA PCR Primer, Index 3 (100% over 34bp)
TCATGAGCTGACAGTTTCGGTTGGGTGGAATTCTCGGGTGCCAAGGAACT1872570.16718160545051833RNA PCR Primer, Index 1 (100% over 25bp)
TGGGTTTAGACCGTCGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAGT1850670.16522639034007316RNA PCR Primer, Index 1 (100% over 30bp)
GGGGTTAGACCGTCGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC1828230.16322296444608275RNA PCR Primer, Index 1 (100% over 31bp)
GTTAGACCGTCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA1826700.16308636722603792RNA PCR Primer, Index 10 (100% over 35bp)
CCTTCCTGTTAACTCTTAATAAACTTACATGGAATTCTCGGGTGCCAAGG1816690.16219268214587554Illumina Small RNA Adapter 2 (100% over 21bp)
GGGATTAGACCGTCGTGAGATGGAATTCTCGGGTGCCAAGGAACTCCAGT1804620.161115081854411RNA PCR Primer, Index 1 (100% over 30bp)
TGCCGACTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1804050.16106419269400216RNA PCR Primer, Index 43 (100% over 40bp)
GCCTGGTTAGTACTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAC1784710.15933753240925283RNA PCR Primer, Index 43 (100% over 36bp)
TGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTC1769220.15795459715533522RNA PCR Primer, Index 43 (100% over 44bp)
AAGCAGAACTGGCGCTGCGGGATGGAATTCTCGGGTGCCAAGGAACTCCA1761260.1572439344941871RNA PCR Primer, Index 1 (100% over 28bp)
TCTGGCATGTTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAC1738980.15525479327680267RNA PCR Primer, Index 43 (100% over 36bp)
GGGTTTAGACCGTCGTGAGACATGGAATTCTCGGGTGCCAAGGAACTCCA1702520.1519996725952122RNA PCR Primer, Index 1 (100% over 28bp)
CTGAAAATGGATGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAC1674890.1495328875038149RNA PCR Primer, Index 43 (100% over 36bp)
CCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCT1671350.1492168390339073RNA PCR Primer, Index 43 (100% over 43bp)
TGGGTTTAGACCGTCGTGAGATGGAATTCTCGGGTGCCAAGGAACTCCAG1669700.14906952830640802RNA PCR Primer, Index 1 (100% over 29bp)
TCTGGCATGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1663320.1484999268267441RNA PCR Primer, Index 43 (100% over 40bp)
TGACTGAACGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA1623240.144921615336943RNA PCR Primer, Index 43 (100% over 37bp)
TGAAAATGGATGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA1587980.1417736297298975RNA PCR Primer, Index 43 (100% over 37bp)
CTTCGGGATATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1586940.14168077933195852RNA PCR Primer, Index 43 (100% over 40bp)
TAGTTGGATCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGC1576120.1407147780764783RNA PCR Primer, Index 43 (100% over 39bp)
GGTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA1541640.13763643026788697RNA PCR Primer, Index 43 (100% over 37bp)
GCTAGAGGTGAAATTCTTGGACCTGGAATTCTCGGGTGCCAAGGAACTCC1515710.13532141986542834RNA PCR Primer, Index 1 (100% over 27bp)
CGGGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTCG1514130.13518035868394418RNA PCR Primer, Index 43 (100% over 45bp)
GTTTAGACCGTCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAC1513240.13510090017032336RNA PCR Primer, Index 43 (100% over 36bp)
GATTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA1500450.13395901883413183RNA PCR Primer, Index 43 (100% over 37bp)
ACATTTGGTGTATGTGCTTGGTGGAATTCTCGGGTGCCAAGGAACTCCAG1479110.13205380009180762RNA PCR Primer, Index 1 (100% over 29bp)
CGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTC1464440.1307440738054957RNA PCR Primer, Index 43 (100% over 44bp)
TTTGGTGTATGTGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTA1446230.12911829904927621RNA PCR Primer, Index 10 (100% over 35bp)
TTTTGATCCTTCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAC1436420.1282424698148713RNA PCR Primer, Index 43 (100% over 36bp)
TACCCTGTAGAACCGAATTTGTTGGAATTCTCGGGTGCCAAGGAACTCCA1402930.12525250844277955RNA PCR Primer, Index 1 (100% over 28bp)
AGTAAGATCTAACAATACCATAGTAGGCCTGGAATTCTCGGGTGCCAAGG1369030.12222594258688493Illumina Small RNA Adapter 2 (100% over 21bp)
GGGTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAC1351150.12062962997616529RNA PCR Primer, Index 43 (100% over 36bp)
CTGGCATGTTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA1347110.120268941891864RNA PCR Primer, Index 43 (100% over 37bp)
AGTTGGATCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1342830.11988682679265371RNA PCR Primer, Index 43 (100% over 40bp)
TCTCGTCTGATCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACA1303470.11637279634757962RNA PCR Primer, Index 43 (100% over 37bp)
CGGGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTC1272800.11363460240066847RNA PCR Primer, Index 43 (100% over 44bp)
CGGTTGGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1270060.11338997731379086RNA PCR Primer, Index 43 (100% over 40bp)
ATGGTTGCAAAGCTGAAACTTAATGGAATTCTCGGGTGCCAAGGAACTCC1268630.11326230801662479RNA PCR Primer, Index 1 (100% over 27bp)
TCTTGGACCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCAT1261450.11262128315393088RNA PCR Primer, Index 43 (100% over 41bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTCGTATGC1240260.11072945629592477RNA PCR Primer, Index 43 (100% over 50bp)
TGGGTTTAGACCGTCGTGAGACATGGAATTCTCGGGTGCCAAGGAACTCC1233890.11016074760854871RNA PCR Primer, Index 1 (100% over 27bp)
TGGGATTAGACCGTCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC1223420.10922599408314411RNA PCR Primer, Index 1 (100% over 33bp)
TTCATGAGCTGACAGTTTCGGTTGGGTGGAATTCTCGGGTGCCAAGGAAC1221700.10907243380962968RNA PCR Primer, Index 1 (100% over 24bp)
TTCTTGGACCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1217710.10871620968676775RNA PCR Primer, Index 43 (100% over 40bp)
ATTGGAGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATC1207520.10780645434542362RNA PCR Primer, Index 43 (100% over 42bp)
CGGCCCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATC1167380.10422278610189531RNA PCR Primer, Index 43 (100% over 42bp)
TTTAGACCGTCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAG1146190.1023309592438892RNA PCR Primer, Index 43 (100% over 38bp)
TCGGATAGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCA1139850.10176492893337677RNA PCR Primer, Index 43 (100% over 40bp)

[FAIL]Adapter Content

Adapter graph