FastQCFastQC Report
Wed 28 Jun 2023
SRR1596101.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1596101.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111116498
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCATC20753261.8677028500304247No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCGT16106641.4495273240162772No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCG10726720.9653579975135644No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCG10210970.9189427478177004No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTGTAGGCACCATCA10122660.9109952331291074No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT8881020.7992530506136002No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAATATCTCGTA8315020.7483155201669512No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA7612730.6851124843765324No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCT6752020.6076523397992618No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA6465000.5818217921158746No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAATATCTCGT6160460.5544145208751989No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAT5539700.4985488293556552No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAATATCTCGT5390010.48507738247834264No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCAT5345930.4811103748068086No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA3878440.34904267771289915No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATATCT3814840.3433189552104135No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCTGTAGGCACCATCAA3503460.31529611381381006No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCTCG3301370.29710889556652514No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATATC3019100.2717058271580877No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTGTAGGCACCATC2626900.23640953839275963No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATATCT2598400.2338446627430609No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCTC2475930.22282289710030276No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCCTGTAGGCACCATCAATATCTC2396070.2156358455429364No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT2375770.2138089341152562No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAT2369150.21321316299943147No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGACTGTAGGCACCATCAATATC2232060.20087566114619632No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGATCTGTAGGCACCATCAATA2214600.1993043373271177No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCCTGTAGGCACCATCAAT2091840.18825647294967846No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCATCAATATCTC2082000.18737091588325616No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGCTGTAGGCACCATCAATAT1983130.17847304726972227No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATATCTCG1948730.17537719736271745No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCCTGTAGGCACCAT1838590.1654650779220922No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCCTGTAGGCACCATCAATATCTC1826940.1644166287530048No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGTAGGCACCAT1791870.16126048176932287No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCTGTAGGCACCATCAATATCTCGTAT1567870.141101459119059No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAATATCTCG1546140.13914585393070975No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAT1526420.13737113997239186No Hit
CCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCGTA1507980.13571162042921833No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAATAT1488160.13392790690721731No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGCTGTAGGCACCATCAATATC1462740.13164021781895968No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCTGTAGGCACCATCAATATCTCG1437970.12941102589464257No Hit
CCCCGCCCCTTGCCTCTCGGCGCTGTAGGCACCATCAATATCTCGTATGC1426900.12841477419491748No Hit
CGGTGGGGGGCGGGGCGGACTGTCTGTAGGCACCATCAATATCTCGTATG1425110.12825368200498904No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCTGTAGGCACCATCAATATCTC1374150.12366750435205401No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCTGTAGGCACCATCAATATC1343910.12094603629426838No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGCTGTAGGCACCAT1331830.11985888900134345No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA1331490.11982829048482072No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCTGTAGGCACCATCAAT1297540.11677293861439009No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAATAT1294460.11649575205294896No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGGCACCATCAAT1260740.1134610991789896No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGCTGTAGGCACCATC1254530.11290222627426576No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCCTGTAGGCACCATC1251530.11263223936377117No Hit
TGACGTACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATATCT1235460.1111860094798884No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCTGTAGGCACCATCAATATCTCGTA1183490.10650893623375352No Hit
CCCCCGCCCCTTGCCTCTCGGCGCTGTAGGCACCATCAATATCTCGTATG1151400.10362097624782955No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAATA1149760.10347338340342582No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGACTGTAGGCACCATCAATAT1149310.10343288536685165No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATATC1134760.10212344885095281No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATCTGTAGGCACCATCAAT1134290.10208115090164199No Hit
CCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCTCGT1120890.1008752093680994No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCTGTAGGCACCATCAATATCTCGT1115230.10036583406363292No Hit
CGGGCGGGCGTCCCGCGCGTGTGGGGGGACTGTAGGCACCATCAATATCT1114460.10029653742327264No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)