FastQCFastQC Report
Sun 2 Jul 2023
SRR1596103.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1596103.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98791080
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAAT14203011.4376814182009146No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATATCTCG9317400.9431418302138209No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCATCAATATCTC8799860.8907545094152225No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAGGCACCATCAA7053510.7139824769604705No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA6820500.6903963394265961No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGGCACCATCAAT5204690.5268380505608401No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATAT4752700.4810859441965813No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA4216500.4268097888999695No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGTCTGTAGGCACCATCAATATCT4118600.41689998732679107No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCAATATCT3887130.3934697343120451No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCT3799460.3845954513302213No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAATAT3407870.34495725727464466No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCTCG3146230.3184730848169693No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATA3138030.3176430503644661No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATATCT2956760.2992942277784594No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGTGCTGTAGGCACCATCAATATC2759120.2792883729988578No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATATC2678000.2710771053418993No Hit
TCTCGCCCGTCACGTTGAACGCACGTTCGCTGTAGGCACCATCAATATCT2622870.26549664200452106No Hit
ACGTACGCAGTTTTATCCGGTAAAGCCTGTAGGCACCATCAATATCTCGT2500730.25313317761077214No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATCTGTAGGCACCATCAATA2478460.2508789255062299No Hit
CTCGCCCGTCACGTTGAACGCACGTTCCTGTAGGCACCATCAATATCTCG2386480.24156836831827327No Hit
ATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATATCTCGTA2327900.23563868316856137No Hit
CATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATATCTCGT2246850.22743450117156325No Hit
TGACGTACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATATCT2225180.22524098329525297No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGTAGGCACCATCAATATCTCGT2140530.21667239592886323No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAGGCACCATCAA2064310.20895712446913225No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAT1983970.20082481130887525No Hit
TGCACGAGCGTACGCGTTAGGACCCGAAACTGTAGGCACCATCAATATCT1853030.1875705782343912No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCTC1846460.18690553843525143No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCGT1816620.18388502281784955No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGCTGTAGGCACCATCAATATC1747400.17687831735415788No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCTGTAGGCACCATCAATAT1709120.17300347359296No Hit
CGCGGCGTGGGAAATGTGGCGTACGCTGTAGGCACCATCAATATCTCGTA1644950.16650794788355386No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCTGTAGGCACCATCAATATCT1622990.16428507513026477No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCCTGTAGGCACCATCAATATCTC1558700.15777740257521225No Hit
CGCGGCGTGGGAAATGTGGCGTACCTGTAGGCACCATCAATATCTCGTAT1554330.15733505494625627No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGACTGTAGGCACCATCAATA1535600.1554391347882825No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCTGTAGGCACCATCAATATCTCGT1506780.1525218673588749No Hit
GACGTACGCAGTTTTATCCGGTAAAGCGCTGTAGGCACCATCAATATCTC1487400.1505601517869832No Hit
GTCGCGGCGTGGGAAATGTGGCGTACCTGTAGGCACCATCAATATCTCGT1470090.14880796930249168No Hit
ACGCGCGCTACACTGACTGGCTCAGCGCTGTAGGCACCATCAATATCTCG1438850.1456457404858819No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCTGTAGGCACCATCAATATC1413790.14310907422006117No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATAT1407730.14249565851491855No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGACTGTAGGCACCATCAAT1402410.14195714835792866No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAATATC1394170.14112306495687668No Hit
TGACCGGGGTCCGGTGCGGAGAGCCGTTCGTCTGTAGGCACCATCAATAT1384420.1401361337481076No Hit
TGACCGGGGTCCGGTGCGGAGAGCCGTTCGTCCTGTAGGCACCATCAATA1354340.13709132443941296No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTCTGTAGGCACCATCAATATC1305640.1321617295812537No Hit
TTGTCCTAAGGCGAGCTCAGGGAGGACCTGTAGGCACCATCAATATCTCG1253240.12685760698233078No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAGGCACCATCAA1246610.12618649376036783No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGACTGTAGGCACCATCAATATCTC1234110.12492119733886904No Hit
ACATTGATCATCGACACTTCGAACGCACTGTAGGCACCATCAATATCTCG1207100.12218714483129449No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCCTGTAGGCACCATCAATATCTCGT1194900.12095221552391167No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGATCTGTAGGCACCATCAATA1185040.11995414970663344No Hit
CCCGTCGCCGCGCTCTCCCTCTCCCCCTGTAGGCACCATCAATATCTCGT1184590.11990859903545947No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATATC1171020.11853499324028038No Hit
TTGTCCTAAGGCGAGCTCAGGGAGGACACTGTAGGCACCATCAATATCTC1169830.11841453702095373No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAATATCTC1159670.1173861040895595No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGCTGTAGGCACCATCCATATCT1143860.11578575717564785No Hit
CCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCGTA1122910.11366512037321588No Hit
TGTGCGCCGCGACCGGCTCCGGGACGGCCGGGCTGTAGGCACCATCAATA1119900.11336043699491899No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATTCTGTAGGCACCATCAA1119320.11330172724096142No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCTGTAGGCACCATCAATATC1107720.11212753216181055No Hit
TCTCGCCCGTCACGTTGAACGCACGTTCGTCTGTAGGCACCATCAATATC1105210.1118734606403736No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCTGTAGGCACCATCAATAT1104330.11178438377230009No Hit
TCACGAGCGTACGCGTTAGGACCCGAAACTGTAGGCACCATCAATATCTC1087760.1101071068359613No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCG1087020.11003220128780856No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATATCTCG1076010.10891772819975246No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCTGTAGGCACCATCAATA1039320.10520383014336922No Hit
TGACCGCCTGGGAATACCGGGTGCTGTAGGCTTCTGTAGGCACCATCAAT1039150.10518662211203683No Hit
GTCGCGGCGTGGGAAATGTGGCGTACGCTGTAGGCACCATCAATATCTCG1039080.10517953645207644No Hit
TCGCGGCGTGGGAAATGTGGCGTACGCTGTAGGCACCATCAATATCTCGT1008640.1020982866064426No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)