FastQCFastQC Report
Tue 27 Jun 2023
SRR1598971.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1598971.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28443731
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCTCGTA4160121.4625788719489718No Hit
CTAAACCATTCGTAGACGACCTGCTTTCGTATGCCG2511120.8828377683644948No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCTCGTA1963140.6901837174595695No Hit
AGCGTGTACTCCGAAGAGGATCCAAACTCGTATGCC1851550.6509518740702477No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCTCCTAT1766350.6209979977661861No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTTCGTA1174260.41283613601886476No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTTTCGT1105140.38853552651021767No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTTCGTATGCC1096820.3856104531434361No Hit
CCCCATGTGAGAGTAGGTCATCGTCAAGATTCGTAT955090.33578225022589336No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCGTATGCC954360.33552560316366375No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTTCGTATGC952470.33486113337241163No Hit
CAGGATAGCTGGCGCTCTCGCAGACCCGTCGTATGC884160.310845296631444No Hit
CAGGATAGCTGGCGCTCTCGCAGACCCGATCGTATG829540.29164247123557735No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGTCGTATGC798290.2806558675442402No Hit
ACGGTGGCCATGGAAGTCGGAATCCGCTTCGTATGC765980.26929659825569296No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCGTATGCCG747710.26287339027358964No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCTCCCATG720880.25344073180835525No Hit
CGGGACATGTGGCGTACGGAAGACCCGTCGTATGCC709850.2495629001694609No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCATCGTATG669250.23528910465367572No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTTCGTAT653790.22985381207549743No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGTA653040.2295901335869053No Hit
CGATCAAAAGGGACAAGCATCAAGCACGCAGCTCGT636490.2237716282719732No Hit
CTAAACCATTCGTAGACGACCTGCTTCTCGTATGCC632790.22247081439491886No Hit
CGACTGCATAATTTGTGGTAGTGGGGGATCGTATGC626380.2202172422457518No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCTCGTATGC617180.21698278611902216No Hit
GAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTATG610480.21462725828759946No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGTCGTATG605090.21273228888291765No Hit
CGGGGCGCGGGACATGTGGCGTACGGAAGTCGTATG593130.2085274959181691No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGTCGTATGC577490.2030289205027287No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCTCGTATGC571680.2009862911444353No Hit
CTAAACCATTCGTAGACGACCTGCTTCTTCGTATGC533880.18769689531939393No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCGTCGTAT506500.178070872629192No Hit
CCCCGCCACGCAGTTTTATCCGGTAATCGTATGCCG492480.1731418427491105No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTTCGTATG490260.17236135442287795No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCTCCTATG457860.1609704437156996No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACCTCGTAT444340.15621719949467952No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGTCGTAT443440.155900785308369No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCTCGTAT443210.15581992390520077No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTATCGTA442620.15561249682750833No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGTCGTATGC435400.1530741519106618No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGTCGTAT434390.15271906487935777No Hit
CCCCGCCACGCAGTTTTATCCGGTAAATCGTATGCC427260.1502123613811423No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCATCGTAT422390.14850020906188433No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCTCCCAT418100.14699196810713755No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTCGTATGCCG417100.14664039678901478No Hit
CATTGATCATCGACACTTCGAACGCATCGTATGCCG414190.14561732425327745No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCTCGTATG410070.14416885042261157No Hit
TTGAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTA396100.13925739910843624No Hit
CGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGTCGT391420.13761204533962157No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGTAT388820.13669795991250233No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN387820.13634638859437953No Hit
TGAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTAT386820.13599481727625676No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGATCGTATG346540.12183352458227087No Hit
AAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTATGC346360.12177024174500878No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGTCGTATG342070.12026200079026202No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTCGTATG341690.12012840368937534No Hit
GCGGGTATAGTTTAGTGGTAGAACCTCAGCCTCGTA336840.11842328279647982No Hit
CCCCCCGAGTGTTACAGCCCCCCCGGCTCGTATGCC335700.11802249149381984No Hit
AAAAATTAGAGTGTTCAAAGCAGGCCCTCGTATGCC327780.11523804665428737No Hit
AGGATAGCTGGCGCTCTCGCAGACCCGATCGTATGC321950.11318838586963152No Hit
GAGAGGTGTAGAATAAGTGGGAGGCCCTCGTATGCC313070.11006643256470117No Hit
CCTGGTGGTCTAGTGGTTAGGATTCGGCGTCGTATG310310.10909609572668226No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGCTCGTATG307090.10796403608232691No Hit
CGGGGCGCGGGACATGTGGCGTACGGAAGATCGTAT306230.1076616847487413No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCAGTCGTAT299250.10520771694824424No Hit
CCCACATGGTCTAGCGGTTAGGATTCCTGGTCGTAT297700.1046627814051539No Hit
AAAAGGGACAAGCATCAAGCACGCAGCTCGTATGCC297130.10446238575382394No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTATCGTAT287340.10102050254940183No Hit
GGCATTAACGCGAACTCGGCCTACAATAGTGACTCG287060.10092206258032746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)