FastQCFastQC Report
Tue 27 Jun 2023
SRR1598981.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1598981.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29613617
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTGTACTCCGAAGAGGATCCAAACTCGTATGCC5690991.921747687896416No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCTCGTA4067161.3734087261275785No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCTCCTAT3872061.307526871844125No Hit
CTAAACCATTCGTAGACGACCTGCTTTCGTATGCCG2084250.703814734957908No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCTCCCATG1952020.6591629789768673No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCTCCTATG1843860.6226392405898948No Hit
CCCCATGTGAGAGTAGGTCATCGTCAAGATTCGTAT1803930.6091555786650446No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGTCGTATGC1443350.4873940255254871No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGTCGTATG1380810.46627536244559387No Hit
GGCATTAACGCGAACTCGGCCTACAATAGTGACTCG1340910.452801830995518No Hit
GAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTATG1254080.42348086017321024No Hit
CGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGTCGT1027650.3470194134002611No Hit
TTGAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTA1025110.346161699869354No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTTCGTAT1023340.34556400185765895No Hit
TGAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTAT941800.3180293714205867No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTTCGTA891090.3009054922267685No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTTCGTATG875260.295559978370761No Hit
GCGGGTATAGTTTAGTGGTAGAACCTCAGCCTCGTA866480.29259512608675936No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCTCCCAT810630.273735558881578No Hit
CGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGATCG788990.26642810974424364No Hit
AGGGAGTCGGGTTCAGATCCCCGAATCCGGATCGTA722920.24411742746588502No Hit
AGCGTGTACTCCGAAGAGGATCCAAATCGTATGCCG702350.23717129859550762No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTTTCGT696860.23531742171177533No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCTCGTAT691350.23345679117819348No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTATCGTA640790.21638356435824774No Hit
CTAAACCATTCGTAGACGACCTGCTTCTCGTATGCC582770.1967912261443781No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCTCGTATG511160.17260978285766307No Hit
CCCATGTGAGAGTAGGTCATCGTCAAGATTCGTATG502720.16975974262110569No Hit
AAAAAATTAGAGTGTTCAAAGCAGGCCCTCGTATGC499680.16873318784395705No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTCGTATG492040.16615329360138614No Hit
AAAAATTAGAGTGTTCAAAGCAGGCCCTCGTATGCC488530.16496802805277044No Hit
GATGGTTTAGTGAGGCCCTCGGATCGGCTCCTATGC481260.1625130763324183No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTATCGTAT460640.1555500633374167No Hit
TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCTCGT445620.15047807230032048No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN433150.1462671716190562No Hit
GTACAGTGAAACTGCGAATGGCTCATTATCGTATGC369200.12467237622476174No Hit
CCCCATGTGAGAGTAGGTCATCGTCAAGATCGTATG368810.12454068005269332No Hit
AGTGAAACTGCGAATGGCTCATTAAATCTCGTATGC366060.1236120531983648No Hit
AGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTCGT362670.12246730954884708No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCATCGTAT355720.1201204162260895No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTCGTATGC355090.11990767625582514No Hit
TAGTGAGGCCCTCGGATCGGCCCCGCCGGTCGTATG349560.11804029207239358No Hit
CGGCGGTAACAGGGGTTCGAGTCCCCTAGGGTCGTA346440.11698672269584631No Hit
AAAATTAGAGTGTTCAAAGCAGGCCCTCGTATGCCG345050.11651734403129481No Hit
TCCCCATGTGAGAGTAGGTCATCGTCAAGATTCGTA344000.11616277741418753No Hit
AAGGGAGTCGGGTTCAGATCCCCGAATCCGGATCGT313730.105941128366724No Hit
GTACAGTGAAACTGCGAATGGCTCATTAATCGTATG304410.10279392753678147No Hit
CTGAGAAGACGGTCGAACTTGACTATCTTCGTATGC303330.10242923044489972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)