FastQCFastQC Report
Thu 14 Sept 2023
SRR16077416_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16077416_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20287963
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length85
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACCGGGGTCCGGTGCGGAGAGCCGTTCAAAAAAAAAAAAAAAAAAAA3727611.8373505511617898No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAAA2293271.130359908483666No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAAA1772030.8734390929242133No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAAAA1512530.7455307366244703No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAAA1377530.6789888171621764No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAAAA1101420.5428933402530357No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTCAAAAAAAAAAAAAAAAAAAG1098570.5414885663977207No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAA874560.43107334136995423No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTCGAAAAAAAAAAAAAAAAAAA852600.42024918913742104No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCAAAAAAAAAAAAAAAAAAA775620.3823055079506996No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTCGTAAAAAAAAAAAAAAAAAA687120.3386835829698625No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAAAG632470.3117464281653116No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAAA560470.2762574044520882No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAAAAAA552770.2724620505272018No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA506440.24962584957395673No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAAAA463230.22832750631495138No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAAAA444180.21893770212416103No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTCCAAAAAAAAAAAAAAAAAAAA405110.199679977728666No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAA383020.1887917480922062No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAAAA357080.1760058414933032No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAA356980.1759565511825904No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAAAAAAAAAAAAG355160.17505946752761722No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAAGA353030.17400958390943438No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAAAAAAAAAAAAA350220.1726245261784044No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAAGA341700.16842499170567296No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAA295100.14545570691350335No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAAG292050.14395235243676263No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG291530.143696042821056No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTCGTCAAAAAAAAAAAAAAAAA288630.14226662381038452No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCAAAAAAAAAAAAAAAAAAAA279290.13766290878980803No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA271180.13366546459099912No Hit
GGGACCGGGGTCCGGTGCGGAGAGCCGTTCAAAAAAAAAAAAAAAAAAGA270610.1333845098199361No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCACAAAAAAAAAAAAAAAAAAA268520.13235434232603835No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCGTAAAAAAAAAAAAAAAAA251820.12412286043699902No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCAAAAAAAAAAAAAAAAAAAAG250300.12337364771416431No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCAAAAAAAAAAAAAAAAAAAAA247150.12182100292671078No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAAAAAAA231720.11421550798372414No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAAAAG224820.11081447654454023No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAAAG220040.1084583996924679No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCGAAAAAAAAAAAAAAAAAA217950.10742823219857016No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAAAAAAAAAAAA212100.10454474902187076No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAAAA206900.10198165286480461No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)