FastQCFastQC Report
Wed 9 Aug 2023
SRR1646630_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1646630_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20363001
Total Bases875.6 Mbp
Sequences flagged as poor quality0
Sequence length43
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATA614041530.15476451629109No Hit
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGA519462525.51011513479767No Hit
AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGA4070791.999111034763491No Hit
TTTGACCTCAAATCAGGTAGGACTACGCGCTGAACTTAAGCAT2320791.1397092206595678No Hit
GTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCA2171371.0663310383376203No Hit
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGA2042411.003000490939425No Hit
TTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCAT1563110.7676226112251333No Hit
TGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATAT920230.4519127607959161No Hit
ATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGAT738560.3626970307569105No Hit
AGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGC542770.26654715579496363No Hit
GGGAACAAAAGCTGGGTACCGGGCCCCCCCTCGAGATGTGGAA455960.22391591494789986No Hit
TATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGA439270.21571967707510303No Hit
AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAG408190.20045670085661735No Hit
ATTTGACCTCAAATCAGGTAGGACTACGCGCTGAACTTAAGCA349200.1714874934200514No Hit
ATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAG307910.15121052147470798No Hit
TTGACCTCAAATCAGGTAGGAGTACACGCTGAACTTAAGCATA292150.1434709942802635No Hit
CTTGTGGCTCTTGGCGAACCAGGACTTTTACTTTGAAAAAATT291480.14314196615714944No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATN275970.13552521065043407No Hit
ATTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCAT247070.12133280354894645No Hit
ATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCG245370.12049795607238835No Hit
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGN234680.11524823870509068No Hit
TTAAAGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTT214750.10546087975932428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)