FastQCFastQC Report
Thu 29 Jun 2023
SRR1646667_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1646667_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1104182
Total Bases62.9 Mbp
Sequences flagged as poor quality0
Sequence length57
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC24032921.765343032217515No Hit
TAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCA994639.007844721250663No Hit
TTTGACCTCAAATCAGGTAGGACTACGCGCTGAACTTAAGCATATCAATA622295.6357556996944345No Hit
TTAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGC266722.4155438143349555No Hit
AAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG163501.480734154333253No Hit
GAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAAT91650.8300262094473556No Hit
ATTTGACCTCAAATCAGGTAGGACTACGCGCTGAACTTAAGCATATCAAT87620.7935286030744932No Hit
CTTTATTGAGCGTGGTAGGGAACCAGGACTTTTACCTTGAAAAAATTAGA84770.7677176407512529No Hit
TTATTTAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGA83300.754404618079266No Hit
ATTTAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAAC80640.7303143865775751No Hit
GAAAATGATGAAAATAACGCGGATGAAATATATGTCCGAGAGCGCAAAAA78390.7099373110592275No Hit
TAAAAATATATATAATGAGTTTGATGTTAGCTCGGTTATAACGCTATCTA77240.6995223613498499No Hit
GTTGTAATTTCAAGAAGCTGCTTTGAGTGTAGACGATCGGTCTAAGTTCC76160.6897413651010431No Hit
AACACCAAGCCTATGTTAAGGAGCAACTCAAGACCACCAACGACAAGCCC65010.5887616353101209No Hit
TATTTAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAA64620.5852296088869408No Hit
CAAACCGCCTTTTAATTTAAAGGTTTTACAGCTGTTACATGAGCATGGTT63010.570648679293812No Hit
CCAAGTTTGTTCCTGAATGTGGCTTCCCTCCAGGTGTCATCAATGTTCTC36570.33119540075820836No Hit
TTTAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACG34060.30846364095774065No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAA31430.2846451037962945No Hit
ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA29540.2675283603608825No Hit
TGAAAATGATGAAAATAACGCGGATGAAATATATGTCCGAGAGCGCAAAA27640.2503210521453891No Hit
ATCACCTCAAGCATCTCTTCTTCCGCTTCTTCCTCTGTTAGCTCCTCTTC23420.21210271495097727No Hit
CATATAAAGCGCTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAA20510.18574836394724784No Hit
TGTCCGAGTTGTAATTTCAAGAAGCTGCTTTGAGTGTAGACGATCGGTCT19940.18058617148259978No Hit
TTGAAAATGATGAAAATAACGCGGATGAAATATATGTCCGAGAGCGCAAA16800.15214883053699482No Hit
TTTTACCTCAAATCAGGTAGGACTACGCGCTGAACTTAAGCATATCAATA15850.14354517642924808No Hit
ATTATTTAAAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAG15770.1428206581885957No Hit
AATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAG15750.14263952862843263No Hit
TTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTCAGAGGTGAAATT15340.1389263726450893No Hit
TCTCCTTTAGTATAGGGGTAGTACACAAGCCTGTCACGCTTGCAGCCCGG14740.13349248584019663No Hit
TTTTTTATTTGACCTCAAATCAGGTAGGACTACGCGCTGAACTTAAGCAT13390.12126624052918812No Hit
CCAGGATTCATCGATCGCTGCCTTGCCAGTCCACCAGTGGAGCATTGGGC13070.1183681675665787No Hit
AAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCG12780.11574178894421391No Hit
AAATATATATAATGAGTTTGATGTTAGCTCGGTTATAACGCTATCTAGAG12670.11474557636331692No Hit
TAGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATAAACTAT11180.10125142413116679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)