FastQCFastQC Report
Thu 29 Jun 2023
SRR1646669_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1646669_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1187111
Total Bases67.6 Mbp
Sequences flagged as poor quality0
Sequence length57
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAA41772035.18794788355933No Hit
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC1076549.068570672835143No Hit
AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGC303182.5539313509857124No Hit
TTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATA124091.0453108428782145No Hit
GTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAAT115300.9712655345624799No Hit
CACCACTGACTACACTGTAGTCACTGAATATACTACTTACTGTCCAGAAC106080.8935979870458617No Hit
TATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAA62100.5231187311043365No Hit
GAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAAT55210.4650786657692499No Hit
GTTGTAATTTGGAGAGGGCAACTTTGGGGCCGTTCCTTGTCTATGTTCCT53810.45328532883614087No Hit
ACTTTTTCTTCGTTTTTAATATCCCGTAATTGATAAATCATGAAACTTTC49670.41841074676251844No Hit
TGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAG47610.40105769384665796No Hit
AGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAA39890.33602586447265675No Hit
ATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGA29890.2517877435218779No Hit
AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAG28890.24336393142680002No Hit
GCCTCTTTTTCCCCCAACCAATTTATCATTATACACAAGTTCTACAACTA26100.21986149568153274No Hit
ACACTGTGGAGTTTTCATATCTTTGCAACTTTTTCTTTGGGCATTCGAGC24330.20495134827324488No Hit
ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG23120.19475853563820064No Hit
TTAAAGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATA20000.16847624190155763No Hit
GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA15410.12981094438515017No Hit
TTTAATGATGAAGATTTTAATTTTCCGTTGGTCTATTAAGAACAGAAGTA14600.12298765658813708No Hit
ATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA13590.11447960637210843No Hit
AAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCG12470.10504493682562119No Hit
ACTAGAAATAGATGAAGATGAATACAAAGAGAAGGTACATGAAATGCAAA12230.10302322192280249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)