FastQCFastQC Report
Thu 29 Jun 2023
SRR1646670_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1646670_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences813898
Total Bases46.3 Mbp
Sequences flagged as poor quality0
Sequence length57
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAA32231339.60115395295233No Hit
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC576307.080739847007857No Hit
AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGC142741.753782414995491No Hit
CACCACTGACTACACTGTAGTCACTGAATATACTACTTACTGTCCAGAAC139611.715325507618891No Hit
ACTTTTTCTTCGTTTTTAATATCCCGTAATTGATAAATCATGAAACTTTC94511.1612020179432805No Hit
TTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATA55580.6828865533518943No Hit
GTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAAT51390.6314059009851357No Hit
GAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAAT41130.5053458787219037No Hit
TGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAG36630.4500563952731178No Hit
GTTGTAATTTGGAGAGGGCAACTTTGGGGCCGTTCCTTGTCTATGTTCCT30500.37473983226399377No Hit
TATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAA24790.3045836210434231No Hit
ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG16460.20223664390378154No Hit
TAACTGCTTGAATAAGATACTACCAAAGGGAGAATTTGACCTGGAAGAAG15080.18528120231282053No Hit
AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAG12970.15935657785127866No Hit
GCCTCTTTTTCCCCCAACCAATTTATCATTATACACAAGTTCTACAACTA12520.15382762950640005No Hit
ATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGA12050.14805295012397132No Hit
AGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAA10970.13478347409626268No Hit
TTTAATGATGAAGATTTTAATTTTCCGTTGGTCTATTAAGAACAGAAGTA10970.13478347409626268No Hit
TAGAAGGGGAAGTGGATACTGACACGGACGATAACAACGAAGGAGATGGC9960.12237405669997961No Hit
GTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATA8930.10971890826614637No Hit
AAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCG8700.10689300133431953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)