FastQCFastQC Report
Thu 29 Jun 2023
SRR1646672_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1646672_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences944511
Total Bases53.8 Mbp
Sequences flagged as poor quality0
Sequence length57
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAA34780336.823605018893375No Hit
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC12551413.28878117883222No Hit
AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGC132661.4045363156172876No Hit
TTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATA107801.1413313344153746No Hit
GTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAAT91310.9667436377130599No Hit
CACCACTGACTACACTGTAGTCACTGAATATACTACTTACTGTCCAGAAC86260.9132768173160503No Hit
GAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAAT57610.6099452520934112No Hit
ACTTTTTCTTCGTTTTTAATATCCCGTAATTGATAAATCATGAAACTTTC44310.46913164589930656No Hit
TGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAG38510.40772420861165193No Hit
GTTGTAATTTGGAGAGGGCAACTTTGGGGCCGTTCCTTGTCTATGTTCCT34240.36251562978091306No Hit
AGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAA30590.3238712942464408No Hit
TATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAA27120.2871327067657232No Hit
ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG22210.2351481348549673No Hit
GCCTCTTTTTCCCCCAACCAATTTATCATTATACACAAGTTCTACAACTA17660.18697505905172093No Hit
TTAAAGTTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATA16280.17236432397293414No Hit
ATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCA14970.1584947131372742No Hit
ACACTGTGGAGTTTTCATATCTTTGCAACTTTTTCTTTGGGCATTCGAGC13530.14324872870723582No Hit
AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAG12900.136578610519094No Hit
ATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGA12490.13223773995220808No Hit
AAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCG11840.12535587198031575No Hit
TTTAATGATGAAGATTTTAATTTTCCGTTGGTCTATTAAGAACAGAAGTA10720.11349788409028587No Hit
GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA10540.11159213603653106No Hit
TATTGACTACCTCTAAAAACACAACCGAACTCTTGGATGGGTTTAGCACA10000.10587489187526668No Hit
GTTTTACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAAT9470.10026352260587754No Hit
GTTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATA9450.100051772822127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)