FastQCFastQC Report
Mon 18 Sept 2023
SRR16584057.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584057.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188958
Total Bases270.1 Mbp
Sequences flagged as poor quality0
Sequence length1-63857
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA4570.24185268684046188No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG4390.23232676044411985No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG3810.20163210872257328No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA3780.20004445432318294No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA2380.12595391568496703No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG2300.12172017061992611No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA1900.10055144529472158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)