FastQCFastQC Report
Mon 18 Sept 2023
SRR16584063.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584063.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9394
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length1-6737
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG230.24483713008303173No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG230.24483713008303173No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA200.21290185224611455No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA180.1916116670215031No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA150.1596763891845859No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA140.14903129657228018No Hit
AGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA130.13838620395997445No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA120.12774111134766872No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG120.12774111134766872No Hit
CCTGCCAGTAGTCAACATGCTTGTCTCAAAGATTAAGCCATGCATGTCTA100.10645092612305727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)