FastQCFastQC Report
Mon 18 Sept 2023
SRR16584064.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584064.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11202
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length1-6766
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG430.3838600249955365No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG310.2767362970898054No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA300.2678093197643278No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA290.25888234243885017No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA240.21424745581146223No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG230.20532047848598461No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA150.1339046598821639No Hit
AGGTAGGAGTACCCGTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAA130.11605070523120871No Hit
CCTGCCAGTAGTCAACATGCTTGTCTCAAAGATTAAGCCATGCATGTCTA130.11605070523120871No Hit
CAGGTAGGAGTACCCGTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA120.10712372790573112No Hit
CCTGCCAGTAGTCAACTTGCTTGTCTCAAAGATTAAGCCATGCATGTCTA120.10712372790573112No Hit
CCTGCCAGTAGTCAACTTGCTTGTCAAAGATTAAGCCATGCATGTCTAAG120.10712372790573112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)