FastQCFastQC Report
Mon 18 Sept 2023
SRR16584065.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584065.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7005
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length1-6706
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA340.4853675945753033No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA190.27123483226266953No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG140.1998572448251249No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG130.185581727337616No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA110.15703069236259815No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG110.15703069236259815No Hit
CCTGCCAGTAGTCATCGCTTGTCTGAGATTAAGCCATGCATGTCTAAGTA80.11420413990007139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)