FastQCFastQC Report
Mon 18 Sept 2023
SRR16584067.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584067.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10426
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length2-6784
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA350.3356992135046998No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG310.2973335891041627No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG250.239785152503357No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA240.2301937464032227No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG210.20141952810281988No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA180.17264530980241705No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA160.15346249760214847No Hit
CCTGCCAGTAGTCATCGCTTGTCTGAGATTAAGCCATGCATGTCTAAGTA160.15346249760214847No Hit
CCTGCCAGTAGTCAACATGCTTGTCAAAGATTAAGCCATGCATGTCTAAG110.10550546710147708No Hit
CAGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG110.10550546710147708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)