FastQCFastQC Report
Mon 18 Sept 2023
SRR16584069.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584069.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8896
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length1-6729
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA260.2922661870503597No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA230.2585431654676259No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG180.20233812949640287No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG180.20233812949640287No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG180.20233812949640287No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA170.19109712230215828No Hit
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA160.1798561151079137No Hit
CCTGCCAGTAGTCAACATGCTTGTCTCAAAGATTAAGCCATGCATGTCTA120.13489208633093525No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA100.11241007194244604No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA100.11241007194244604No Hit
ACAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA90.10116906474820143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)