FastQCFastQC Report
Mon 18 Sept 2023
SRR16584071.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584071.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1238
Total Bases2 Mbp
Sequences flagged as poor quality0
Sequence length5-5166
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA100.8077544426494345No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG40.32310177705977383No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA40.32310177705977383No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG40.32310177705977383No Hit
CCTGCCAGTAGTCAACATGCTTGTCAAAGATTAAGCCATGCATGTCTAAG30.24232633279483037No Hit
CCTGCCAGTAGTCAACTTGCTTGTCAAAGATTAAGCCATGCATGTCTAAG30.24232633279483037No Hit
CCTGCCAGTAGTCAACTTGCTTGTCTCAAAGATTAAGCCATGCATGTCTA30.24232633279483037No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA30.24232633279483037No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA20.16155088852988692No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAAAGAAACC20.16155088852988692No Hit
AGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA20.16155088852988692No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG20.16155088852988692No Hit
CCTGCCAGTAGTCAACTCGCTTTGTCTCAAAGATTAAGCCATGCATGTCT20.16155088852988692No Hit
CCTGCCAGTAGTCAACTTGGCTTGTCTCAAAGATTAAGCCATGCATGTCT20.16155088852988692No Hit
CCTGCCAGTAGTCAACTCGCTTGTCACCAAAGATTAAGCCATGCATGTCT20.16155088852988692No Hit
TCAGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA20.16155088852988692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)