FastQCFastQC Report
Mon 18 Sept 2023
SRR16584072.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584072.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8060
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length2-8879
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA981.215880893300248No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA430.533498759305211No Hit
CCTGCCAGTAGTCATATGCTTGTTCAAAGATTAAGCCATGCATGTCTAAG400.49627791563275436No Hit
CCTGCCAGTAGTCATATGCTTGTCAAAGATTAAGCCATGCATGTCTAAGT340.42183622828784123No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG220.2729528535980149No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG200.24813895781637718No Hit
CCTGCCAGTAGTCATATGCTTGTCTAAAGATTAAGCCATGCATGTCTAAG120.1488833746898263No Hit
CCTGCCAGTAGTCATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT110.13647642679900746No Hit
CCTGCCAGTAGTCATATGCTTGTTTCAAAGATTAAGCCATGCATGTCTAA90.11166253101736973No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA90.11166253101736973No Hit
AGGTAGGAGTACCCGTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAA90.11166253101736973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)