FastQCFastQC Report
Mon 18 Sept 2023
SRR16584079.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584079.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13682
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length1-29286
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA460.3362081567022365No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG450.32889928373044874No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA440.321590410758661No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG430.31428153778687323No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA360.26311942698435903No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG290.21195731618184477No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA220.1607952053793305No Hit
CTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT210.15348633240754275No Hit
CCTGCCAGTAGTCAACATGCTTGTCTCAAAGATTAAGCCATGCATGTCTA200.146177459435755No Hit
AGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA160.116941967548604No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGA140.1023242216050285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)