FastQCFastQC Report
Mon 18 Sept 2023
SRR16584080.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584080.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4785
Total Bases7.5 Mbp
Sequences flagged as poor quality0
Sequence length2-9741
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG120.25078369905956116No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA110.22988505747126436No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA110.22988505747126436No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA80.1671891327063741No Hit
CCTGCCAGTAGTCAACATGCTTGTCTCAAAGATTAAGCCATGCATGTCTA70.14629049111807732No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG70.14629049111807732No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGA60.12539184952978058No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG60.12539184952978058No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA50.10449320794148381No Hit
AGGTAGGAGTACCCGCTGAACTTCTAAGCATATCAATAAGCGGAGGAAAA50.10449320794148381No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA50.10449320794148381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)