FastQCFastQC Report
Mon 18 Sept 2023
SRR16584082.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584082.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10204
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length1-5535
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA250.24500196001568014No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA140.13720109760878088No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG130.12740101920815367No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG130.12740101920815367No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA130.12740101920815367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)