FastQCFastQC Report
Mon 18 Sept 2023
SRR16584085.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584085.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23767
Total Bases34.9 Mbp
Sequences flagged as poor quality0
Sequence length1-11391
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA2140.9004081289182481No Hit
CCTGCCAGTAGTCATATGCTTGTCAAAGATTAAGCCATGCATGTCTAAGT820.3450161989312913No Hit
CCTGCCAGTAGTCATATGCTTGTTCAAAGATTAAGCCATGCATGTCTAAG760.31977111120461144No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA650.273488450372365No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG550.23141330416123193No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG440.18513064332898557No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA310.13043295325451254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)