FastQCFastQC Report
Mon 18 Sept 2023
SRR16584086.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584086.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10030
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length1-18792
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA390.38883349950149554No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG320.3190428713858425No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA250.24925224327018944No Hit
CCTGCCAGTAGTCATCGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG230.22931206380857427No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA150.14955134596211367No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGA140.1395812562313061No Hit
CAGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG130.1296111665004985No Hit
CCTGCCAGTAGTCAACTCGCTTGTCAAAGATTAAGCCATGCATGTCTAAG130.1296111665004985No Hit
CCTGCCAGTAGTCATCGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA130.1296111665004985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)