FastQCFastQC Report
Mon 18 Sept 2023
SRR16584087.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584087.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10552
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length1-13159
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA890.8434420015163002No Hit
CCTGCCAGTAGTCATATGCTTGTCAAAGATTAAGCCATGCATGTCTAAGT330.31273692191053826No Hit
CCTGCCAGTAGTCATATGCTTGTTCAAAGATTAAGCCATGCATGTCTAAG280.265352539802881No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG230.21796815769522365No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA220.2084912812736922No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG150.14215314632297196No Hit
CTGCCAGTAGTCATATGCTTGTCAAAGATTAAGCCATGCATGTCTAAGTA120.11372251705837756No Hit
CTGCCAGTAGTCATATGCTTGTTCAAAGATTAAGCCATGCATGTCTAAGT110.1042456406368461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)