FastQCFastQC Report
Mon 18 Sept 2023
SRR16584089.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16584089.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11082
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length1-6032
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA1551.3986645009926006No Hit
CCTGCCAGTAGTCATATGCTTGTCAAAGATTAAGCCATGCATGTCTAAGT660.5955603681645912No Hit
CCTGCCAGTAGTCATATGCTTGTTCAAAGATTAAGCCATGCATGTCTAAG550.49630030680382603No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA390.3519220357336221No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG330.2977801840822956No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG220.1985201227215304No Hit
CCTGCCAGTAGTCATATGCTTGTCTGAGATTAAGCCATGCATGTCTAAGT190.17144919689586718No Hit
TCAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAA170.1534019130120917No Hit
AGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGAA160.14437827107020393No Hit
CCTGCCAGTAGTCATATGCTTGACCAAAGATTAAGCCATGCATGTCTAAG150.1353546291283162No Hit
CCTGCCAGTAGTCAACTCGCTTGTCTCAAAGATTAAGCCATGCATGTCTA140.12633098718642843No Hit
CAGGTAGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAGA140.12633098718642843No Hit
CTGCCAGTAGTCATATGCTTGTTCAAAGATTAAGCCATGCATGTCTAAGT140.12633098718642843No Hit
CCTGCCAGTAGTCATATGCTTGTCTCTGAGATTAAGCCATGCATGTCTAA130.1173073452445407No Hit
AGGTGGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA130.1173073452445407No Hit
CCTGCCAGTAGTCATATGCTTGTACCAAAGATTAAGCCATGCATGTCTAA120.10828370330265295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)