FastQCFastQC Report
Fri 30 Jun 2023
SRR1660333.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1660333.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21771791
Total Bases661.7 Mbp
Sequences flagged as poor quality0
Sequence length21-63
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCGCGACCGGCTCCGGGACGGCTGGG380550.1747903973540808No Hit
CTCGCCGCGACCGGCTCCGGGACGGCTGGG371730.17073928369053332No Hit
TTCGACTGCATAATTTGTGGTAGTGGGG371370.17057393211242933No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG362100.1663161289762519No Hit
TTCGCCGAGGGCGCACCACCGGCCCGTCTCGC358200.1645248202134588No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAG353150.16220530502061128No Hit
TTCGCCGAGGGCGCACCACCGGCCCGTCTCG350210.1608549337994288No Hit
ATCGCCGCGACCGGCTCCGGGACGGCTGGG349210.16039562386025108No Hit
TTTGCGCCGCGACCGGCTCCGGGACGGCTGGG337560.15504466306883066No Hit
TACATATACTAAAATTGGAACGATACAGAGAA336690.15464506342174605No Hit
TTCGCCGCGACCGGCTCCGGGACGGCTGGGA336580.1545945393284365No Hit
CTCGCCGAGGGCGCACCACCGGCCCGTCTCGC335660.154171974184393No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGG335530.1541122638922999No Hit
CACATATACTAAAATTGGAACGATACAGAGAA335360.15403418120263968No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG328910.1510716320949434No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGG327720.1505250532673219No Hit
CGCGCCGCGACCGGCTCCGGGACGGCTGGG325200.14936759222059406No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCG324550.14906904076012856No Hit
CTCGCCGAGGGCGCACCACCGGCCCGTCTCG320350.14713993901558212No Hit
ATCGACTGCATAATTTGTGGTAGTGGGG317170.145679333408997No Hit
CCACTCGCCGAATCCCGGGGCCGAGGGAG316320.14528891996069593No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGC314290.14435652078416517No Hit
CTTGCGCCGCGACCGGCTCCGGGACGGCTGGG312990.14375941786323412No Hit
CTGCGCCGCGACCGGCTCCGGGACGGCTGGG308700.1417889782241617No Hit
TTGTCCGCCCGGAGGATTCAACCCGGCGGCGG304440.13983231788326464No Hit
TTGTCCGCCCGGAGGATTCAACCCGGCGGCGGG300820.1381696159034413No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG300050.13781594725027446No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGG296590.13622673486071957No Hit
CTCGCCGCGACCGGCTCCGGGACGGCTGGGA290260.13331930294572458No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG284890.13085280857234025No Hit
CTGTCCGCCCGGAGGATTCAACCCGGCGGCGG282740.12986529220310813No Hit
CTGTCCGCCCGGAGGATTCAACCCGGCGGCGGG275450.12651692274650259No Hit
TTCGACTGCATAATTTGTGGTAGTGGGGG267240.12274598814585351No Hit
TTTGGCAATTTTTGACAGTCTCTACGGAGACTG266700.12249796077869754No Hit
TTTGGAATGAGTCCACTTTAAATCCTTTAACGA266360.12234179539937712No Hit
CCACTCGCCGAATCCCGGGGCCGAGGGAGCG262320.12048618324509913No Hit
TTTGGCGCTGGAGCGTCGGGCCCATACCCGGCC257920.11846521951271716No Hit
TACGCCGCGACCGGCTCCGGGACGGCTGGG254820.11704135870126624No Hit
TTTTTTTTCACTGACCCGGTGAGGCGGGG253770.11655908326512965No Hit
TTAGTCCGCCCGGAGGATTCAACCCGGCGGCGG249300.11450596783700523No Hit
CACGCCGCGACCGGCTCCGGGACGGCTGGG249050.11439114035221079No Hit
ATCGCCGAGGGCGCACCACCGGCCCGTCTCGC247020.11345874117568004No Hit
CCACTCGCCGAATCCCGGGGCCGAGGGAGC246540.11323827240487473No Hit
TTAACGATGCCGACCGGCGATGCGGCGGCG242550.11140562574755562No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG241460.11090497791385193No Hit
TTCGAGGGCGCACCACCGGCCCGTCTCGC239070.10980722715921717No Hit
TCCGCCGCGACCGGCTCCGGGACGGCTGGG238520.10955460669266942No Hit
TTCGACTGCATAATTTGTGGTAGTGGG235610.10821801476966225No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGA232770.10691357454239755No Hit
TTCCGCCGAGGGCGCACCACCGGCCCGTCTCG229560.10543918963763707No Hit
TTAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG229220.10528302425831665No Hit
TTCGCCGAGGGCGCACCACCGGCCCGTCTC225770.10369840496815351No Hit
TTCGAGGGCGCACCACCGGCCCGTCTCG225450.10355142578761664No Hit
CTTGGAATGAGTCCACTTTAAATCCTTTAACGA223550.10267873690317898No Hit
TTTGAGTCTTAAGCTAATTTTTTGAGGCCT223140.10249041982811612No Hit
CAACGATGCCGACCGGCGATGCGGCGGCG222730.10230210275305326No Hit
TACAGGGAAGAGCCCAGCGCCGAATCCCC221710.10183360661509197No Hit
TTTCACTCGCCGAATCCCGGGGCCGAGGGA220510.10128243468807872No Hit
ATCGCCGAGGGCGCACCACCGGCCCGTCTCG220380.1012227243959856No Hit
TTTGTCCGCCCGGAGGATTCAACCCGGCGGCGG219960.10102981422153098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)