FastQCFastQC Report
Tue 19 Sept 2023
SRR16633439_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16633439_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96561581
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCTTGCTGGCTCCGGTGCGCTTGTGACGGCCCGTGAAAATCCACAGGA1227390.12710955923557216No Hit
GATGGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCC1117490.11572822114418362No Hit
CTAGTTGCTGGCTCCGGTGCGCTTGTGACGGCCCGTGAAAATCCACAGGA1093740.1132686508105123No Hit
CCAGCGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGG1048320.1085649167239712No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)