FastQCFastQC Report
Tue 19 Sept 2023
SRR16633440_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16633440_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66252678
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGCGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGG1048120.1582003975748724No Hit
GATGCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTC810630.12235429939903711No Hit
CAGCCGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGG701370.10586289055364674No Hit
TGTACGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTC675880.10201549890556877No Hit
CTGCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTA672680.10153249956175356No Hit
CGCACGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTC670670.10122911559891964No Hit
GATGGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCC668010.10082762239437325No Hit
AGCTCGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGG664640.10031896371041787No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)