FastQCFastQC Report
Tue 19 Sept 2023
SRR16796947_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16796947_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62553676
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length10-67
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1209611019.337168929928275No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC20829443.3298506709661635No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGGG12488321.9964166454422279No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC7668221.2258624097487092No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA7654391.2236515085060709No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG6909861.1046289270034266No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT4799930.7673298048862868No Hit
TTAAACTCTAAGGAGAGGGTATCAAGCACATTAT4418480.706350175167963No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2840740.454128387274954No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAG2741160.43820925887712814No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC2735010.437226103226931No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2605160.41646793067764715No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC2539500.4059713453131036No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC2401090.38384474798891116No Hit
GGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA2268790.3626949118066219No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC2233690.35708373077866756No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGG2100270.3357548483641473No Hit
GGCTCCATAGCTCAGGGGTTAGAGCACTGG2091010.3342745196940944No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC2039420.326027202621953No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA1890240.3021788839396105No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1675820.26790112222981105No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1663860.2659891642499156No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA1517550.24259965153766502No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1484560.2373257808222174No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1438630.22998328667367204No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1397140.22335058294575683No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA1369360.21890959693559817No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAA1315580.2103121805343622No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGG1194670.19098318058877947No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGTT1181520.18888098598713848No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1050960.16800931091563667No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT1049330.1677487347026576No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGG1015030.1622654438405826No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGA984300.157352862843744No Hit
CGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCT976460.15609953921812686No Hit
GAAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC948610.1516473628184537No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG904170.1445430641038586No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAAT886780.14176305162305727No Hit
TAAACTCTAAGGAGAGGGTATCAAGCACATTAT868740.1388791283824791No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT865200.13831321439846317No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAGA855340.1367369681040008No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC853940.13651316031371202No Hit
CGCCGTCGGGCCCGGGGGGCCGGTCACGCCG828240.13240468873483952No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGG824950.13187874042766087No Hit
AGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC803030.12837454988256805No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCG729060.11654950541995325No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGGC727260.11626175254672484No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGAT723210.11561430858196087No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG721830.11539369804581909No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGTT715410.1143673794646377No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT710280.11354728377593669No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC707770.11314602838049037No Hit
CAGTGCGTCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG694500.11102465025396749No Hit
GGGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA692520.11070812209341623No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG666140.10649094387354631No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC627210.10026748867644486No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGC626420.10014119713763904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)