FastQCFastQC Report
Tue 19 Sept 2023
SRR16796948_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16796948_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61430512
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length10-67
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1730217028.165433490119696No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC14910322.427184718890183No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGGG10840591.7646914614678777No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA10496911.7087453218687159No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG9993241.6267551212986797No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC6391441.040434108704808No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT6139470.9994170323698426No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4880480.7944716462724581No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAG3504580.5704950009207151No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA3061610.4983858835492043No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC2876540.4682591608547883No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA2797460.4553860791523275No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC2445270.39805463447870987No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2281830.3714489633425162No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC2139620.3482992295424788No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGG2132830.34719391562290736No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2106360.34288498197768563No Hit
TTAAACTCTAAGGAGAGGGTATCAAGCACATTAT2029380.33035374994107164No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1890620.30776562630635407No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC1711980.27868561473164993No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC1706180.277741458511692No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1688950.2749366633961963No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAA1615670.2630077379136934No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAAT1588120.2585229958688933No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1574340.2562798109187174No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1363060.22188647882342244No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1341500.2183768222540616No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT1289500.20991197338547335No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT1266530.20617278918332962No Hit
GGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA1245110.2026859225916919No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGG1244860.2026452262029006No Hit
GGCTCCATAGCTCAGGGGTTAGAGCACTGG1181180.19227904204998325No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGG1126300.18334537078251928No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG1113320.1812324142764755No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGTT1088460.17718556537506966No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGA1078840.1756195683343808No Hit
CAGTGCCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1053970.17157109157742328No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAGA1016990.16555128174741568No Hit
GAAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC993750.16176814544537738No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGG959880.1562545986919334No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA949090.15449814255170136No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT941510.15326422804354944No Hit
GAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG941200.15321376452144825No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG886720.14434520747605034No Hit
CGCCGTCGGGCCCGGGGGGCCGGTCACGCCG883910.14388778006603622No Hit
CGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCT864510.14072974029583216No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC842730.13718427090433497No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGC820790.1336127558240114No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT814660.13261488037084893No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGC793450.1291621987457959No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGGC793400.12915405946803765No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGC769920.1253318546327597No Hit
AGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC760110.12373492833658947No Hit
CAGTGCGTCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG759410.12362097844797386No Hit
GATGGGCGAGCGCCGTTCCGAAGGGACGGGCG750620.12219009341807212No Hit
GAGATGGGCGAGCGCCGTTCCGAAGGGACGGGC730860.11897345084800855No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG698240.11366338603852105No Hit
ACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGC677330.11025954008001757No Hit
AGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGC663970.10808472506301105No Hit
GGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGGCT655170.10665221217755763No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGTT630320.1026069911317034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)