FastQCFastQC Report
Tue 19 Sept 2023
SRR16796950_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16796950_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69226776
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length10-67
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT44392746.4126545485810285No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG19737262.851102007119326No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC10653201.538884318403041No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC8027821.1596408880864248No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC6417400.9270112477865501No Hit
CGCCGTCGGGCCCGGGGGGCCGGTCACGCCG5799200.8377105413662482No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC5592270.8078189283291194No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT4624690.6680493108620283No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC4460460.6443258313806207No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC4363800.6303630260060067No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACG4220370.6096441642753955No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC3721240.5375434499506375No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT3708110.5356467849954474No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3543170.5118207440427386No Hit
ACGCGGCGCTCCCCCGGGGAGGGGGGAGGAC2196320.3172645220398535No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2135650.30850057209077597No Hit
GGCTCCATAGCTCAGGGGTTAGAGCACTGG2114930.30550751056209813No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC2032990.2936710500572784No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT1900070.27447038700747817No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1892140.27332487648998705No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGG1830260.26438613868136807No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGG1608060.23228873174738052No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGA1565220.22610037480295195No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGA1455740.21028568483385676No Hit
ATTGATCATCGACACTTCGAACGCACT1442380.20835579574007604No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAA1381910.19962073634629465No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1275310.18422207037346358No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA1264350.1826388679432363No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1253900.1811293364290141No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1191940.17217904239827664No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1139500.1646039387996344No Hit
GGCCGCCGGTGAAATACCACTACTCTCA1112070.16064159914077178No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1089610.1573971897810177No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGG1064970.15383787336853588No Hit
TACCCGTCGCCGCGCTCTCCCCCACCG1034040.14936994899199119No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1024290.1479615344213054No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA1009470.14582074427386305No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCG974380.1407518963471591No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGC973330.14060022093185445No Hit
GGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA969870.14010041432523163No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGC906490.1309449973518917No Hit
CGCCGTCGGGCCCGGGGGCCGGTCACGCCG896150.12945135564308238No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAG880890.12724700627398855No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGC852500.12314599194970455No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGTT846330.12225471831881929No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG833110.12034505261374587No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA786640.11363233209069276No Hit
CTAAACCATTCGTAGACGACCTGCTT781720.11292162443040825No Hit
ACGCGTTAGGACCCGAAAGATGGTGAACT775000.11195090177245869No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA768410.11099895797545156No Hit
CAGGCGGCCCGGGTTCGACTCCCGGTGTGGG757310.10939553215651701No Hit
TGGCGCGGCGCGGGAAATGTGGCGTAC745720.10772132447710696No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGC743420.1073890830912016No Hit
TATCCGTACTATTAACCCCAAGATAAGGGTTTA718310.10376187387377393No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG710390.10261780788404765No Hit
GCATTGGTGGTTCAGTGGTAGAATTCT706170.10200821716729953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)