FastQCFastQC Report
Tue 19 Sept 2023
SRR16796952_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16796952_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78940314
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length10-67
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1269206216.078048536771718No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC23269732.947762533602286No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA15848332.007634527524175No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGGG15679561.986255083809269No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT10391391.3163603580294856No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10094041.278692658861225No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC8821801.1175278578192633No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG7405050.9380568210052977No Hit
TTAAACTCTAAGGAGAGGGTATCAAGCACATTAT7290060.9234901193831077No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA6614390.8378976045116822No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC5675210.7189241735217826No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC4618710.5850888812020687No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA4577400.5798558135960797No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAAT4067510.5152639752611068No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC3639320.46102172839089545No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAG3496250.4428979089188827No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3128070.39625760799481996No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT2793940.3539306924976255No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2771980.35114884392276424No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG2642200.3347085748860842No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT2583360.3272548421836782No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGG2524870.3198454467764088No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC2497610.31639220487519215No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC2317570.2935851002568852No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAA1914110.24247559998304544No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGG1881040.23828635898255993No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1850840.23446068380219517No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1822150.23082629238084865No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1801960.22826866384139288No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAGA1647110.20865257769306567No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT1598510.20249602756837273No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGG1545050.1957238224312105No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1470150.1862356412719615No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGA1418640.1797104582077036No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGG1404570.17792809894320916No Hit
CGCCGTCGGGCCCGGGGGGCCGGTCACGCCG1309170.1658430190688119No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1296320.16421520694736533No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACG1253090.1587389176080551No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGG1223720.15501838515615735No Hit
GCGTCGATGAAGAACGCAGCTAGCTGCGAGAATT1222310.15483976919574957No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1221000.1546738210339523No Hit
CGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC1201420.15219346606602047No Hit
TAAACTCTAAGGAGAGGGTATCAAGCACATTAT1174140.1487376906050817No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1138220.14418741734419754No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGC1088950.1379459929688144No Hit
CGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCT1055000.13364527534055665No Hit
GAAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1026860.1300805568115678No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1019520.12915074039355862No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA1017630.12891131899982056No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGA1011710.12816138532208018No Hit
GGCTCCATAGCTCAGGGGTTAGAGCACTGG1008420.12774461474779542No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGTT1004040.1271897651686564No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGC1003350.1271023573582441No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT990670.1254960804944353No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGGC923460.11698205304833217No Hit
GGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA919300.11645507262613626No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGC908850.11513128767134115No Hit
ACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGC885430.11216448923676692No Hit
ATCGACACTTCGAACGCACTTGCGGCCCCGGGT871960.11045813676393536No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG834470.10570897906486665No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG831470.10532894510655229No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG830800.10524407085586206No Hit
GAGATGGGCGAGCGCCGTTCCGAAGGGACGGGC822120.10414450593647245No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG818600.10369859942538359No Hit
GAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG815810.10334516784415121No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC806170.102123992058101No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGTT799660.10129931836855881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)