FastQCFastQC Report
Tue 19 Sept 2023
SRR16796953_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16796953_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73009656
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length10-67
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG1225809616.789691489575024No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGGG37105035.082208577999601No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT11979661.6408322756650162No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG11696361.6020291891253398No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA11261891.542520622203726No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC10834221.4839434389336117No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC7498571.027065515827112No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7449381.0203280508539856No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT7123470.9756887499921927No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG6251510.8562579722331524No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAAT4615680.6322013077283914No Hit
TTAAACTCTAAGGAGAGGGTATCAAGCACATTAT4380500.5999891302049143No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA3525230.48284435143756876No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC3515190.4814691908697666No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAG3478630.4764616340611165No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGG3249390.44506304755086096No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA3205550.4390583623623703No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2833520.3881020888524663No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC2804650.38414781737911485No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC2597300.35574746441758337No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC2382260.32629382612075314No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAA1993580.2730570323465159No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1966560.269356152013646No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATT1641900.22488806138190814No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAAGA1639190.22451687760314884No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGG1624950.22256645066236172No Hit
GGCTCCATAGCTCAGGGGTTAGAGCACTGG1498740.2052796961541635No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGG1497070.20505095928680994No Hit
CGCCGTCGGGCCCGGGGGGCCGGTCACGCCG1478830.20255265960984667No Hit
CGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT1460910.20009818975177748No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTT1451910.19886547609538116No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG1411160.19328402259558652No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1397330.19138975261025745No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTT1395260.19110622846928632No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1390930.1905131562323756No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1381520.1892242856205212No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGA1329230.1820622192768584No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGTT1309110.17930641941389233No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT1300390.1781120568490283No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGG1296630.1775970564770227No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1271660.17417696092144305No Hit
CGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC1186060.16245248436727328No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1185910.16243193913966666No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGGGG1108280.1517990990123279No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1096100.1501308265306715No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGTT1063390.14565059723059098No Hit
ATCGACACTTCGAACGCACTTGCGGCCCCGGGT1051180.14397821570341326No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGG1033460.14155113948215287No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1011240.13850770643269433No Hit
GGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA1001050.13711200063728557No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGGG996820.1365326252187793No Hit
ACGCGCGCTACACTGACTGGCTC969580.13280161188541964No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC960380.13154150459221448No Hit
GGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCT940800.1288596675486322No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGGC935260.12810086380902821No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC918320.1257806227713222No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT898640.1230850889093355No Hit
CAGTGCGTCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG853320.11687769080845962No Hit
ACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGC832670.11404929780795023No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA828630.11349594634441229No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGCG797290.10920336345647211No Hit
GCGTCGATGAAGAACGCAGCTAGCTGCGAGAATT776430.10634620713731345No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCT768090.10520389248238618No Hit
GAAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC751710.1029603536277448No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT747200.10234262711770617No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG742500.1016988766526992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)