FastQCFastQC Report
Tue 19 Sept 2023
SRR16796954_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16796954_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68588195
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length10-67
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT50201127.319207044302595No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCCCGGGG11931151.7395340408068765No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC8062221.1754530061623578No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC7630701.1125383894415066No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC6699730.9768051193066096No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC6323830.9219997697854565No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC6229570.9082568800651482No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT4823870.7033090752716266No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT4371730.6373881103009054No Hit
CGCCGTCGGGCCCGGGGGGCCGGTCACGCCG3691840.5382617227352315No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3682790.5369422536924904No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACG3456130.5038957505734041No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC3132220.4566704226580099No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC2445010.35647679604340077No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC2377660.3466573220070888No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA2347990.3423315047144775No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGA2340360.341219068383415No Hit
ACGCGGCGCTCCCCCGGGGAGGGGGGAGGAC2269810.33093304175740446No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGCC2263610.33002909611486353No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2081110.3034210187336173No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC1824090.2659480979197659No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT1576880.22990545238870919No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT1527210.2226636814104818No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGG1512610.2205350352199821No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTT1499070.21856093457482006No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1327750.19358287530383325No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGCC1323010.19289179428034225No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGG1315660.19182018130087838No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGC1298850.18936932222811811No Hit
GGCTCCATAGCTCAGGGGTTAGAGCACTGG1284910.18733690250924376No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1219360.17777986430463727No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGA1204430.1756031048783249No Hit
AGCCGCCGTGGCGCAATGAAGGTGAAGGGC1189320.17340010186884203No Hit
AAAGCCGCCGTGGCGCAATGAAGGTGAAGGGC1138860.16604315072003278No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC952740.13890728572169014No Hit
TGGCGCGGCGCGGGAAATGTGGCGTACGGAA949230.13839553584986453No Hit
GGCCGCCGGTGAAATACCACTACTCTCA914500.13333198227479234No Hit
ATTGATCATCGACACTTCGAACGCACT862610.12576654043746158No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGG851570.12415693400300153No Hit
GGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA840170.1224948404022004No Hit
AAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTT830820.12113163205417492No Hit
AGTCCGCCGAGGGCGCACCACCGGCCCGTCTCG813890.11866327725930097No Hit
GCGTCGATGAAGAACGCAGCTAGCTGCGAGAATT809900.11808154449902057No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG786700.11469903822370597No Hit
GGGCGGAAGCCGAGCGCACGGGGTCGGCGGCGA777770.11339706490307844No Hit
CGCCGTCGGGCCCGGGGGCCGGTCACGCCG773120.11271910567117271No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA747660.10900709662938352No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCG743760.10843848566068841No Hit
AGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC730380.10648771264501128No Hit
AGATGGGCGAGCGCCGTTCCGAAGGGACGGGC714050.10410683646070581No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC686460.1000842783513985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)