FastQCFastQC Report
Tue 19 Sept 2023
SRR16902778_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16902778_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57051395
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length10-34
%GC71

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC35470656.217315106843575No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG23283004.081057088963381No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT23025924.035995964691135No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC20646463.618922902761624No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC15367022.693539746048278No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG15213832.6666885183087987No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC13136442.3025624526797284No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11767122.0625472874063817No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC8496021.489187074216152No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG6429281.126927746464394No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA5658990.991910890171923No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA4975090.8720365207546633No Hit
TCGCTTCTGGCGCCAAGCGTCCG4479230.7851219063092147No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT4420220.7747786009439384No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG4186520.7338155359741861No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4009210.7027365413238362No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC3480650.6100902528325556No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG3336210.5847727299218538No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCC3279570.5748448394644864No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC3162110.5542563858429754No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC3154630.5529452873150603No Hit
GGCCCGAGGTGGGATCCCGAGGCCT3036310.5322060924189496No Hit
GGGCCCGAGGTGGGATCCCGAGGCCT2842590.4982507439125722No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2769250.4853956682391377No Hit
AGCCGAGCGCACGGGGTCGGCGGCGA2710680.4751294863166799No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG2617690.4588301477991905No Hit
GGTTGGCCCCGGATAGCCGGGTCCC2510790.4400926568053244No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC2446550.42883263415381867No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2430060.4259422578536423No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA2356740.413090687791245No Hit
ACCCCGAGTGTTACAGCCCTCCGG2302210.40353263929830285No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG2180100.38212913111064156No Hit
TGGCCCGAGGTGGGATCCCGAGGCCT2095150.367239048230109No Hit
CGCTTCTGGCGCCAAGCGTCCG2092170.3667167121855653No Hit
GCCGAGCGCACGGGGTCGGCGGCGA2088070.36599806192293804No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCG2053090.3598667482188648No Hit
GGCCCGAGGTGGGATCCCGAGGCC2013630.3529501776424573No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG1950670.34191451409733276No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1905980.33408122623469594No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1889550.3312013667676312No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG1882420.32995161643286725No Hit
CGGTTGGCCCCGGATAGCCGGGT1785730.3130037398734948No Hit
AACGATGCCGACTGGCGATGCGGCGGCG1760200.30852882738450127No Hit
GGGCCCGAGGTGGGATCCCGAGGCC1703570.2986026897326524No Hit
CTCGCTTCTGGCGCCAAGCGTCCG1693140.29677451357674955No Hit
GTTGGCCCCGGATAGCCGGGTCCC1613830.28287301300870904No Hit
CGGTTGGCCCCGGATAGCCGGGTCC1593170.2792517168072753No Hit
AAGCCGAGCGCACGGGGTCGGCGGCGA1506530.2640654097940988No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC1479020.2592434418124219No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1368070.23979606458352157No Hit
TGGCCCGAGGTGGGATCCCGAGGCC1360580.23848321325008792No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1352730.23710726091798456No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1341340.23511081543229573No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1328390.23284093228570485No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1304830.22871132248387616No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1271910.22294108671663507No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1266260.22195075159862437No Hit
ACGATGCCGACTGGCGATGCGGCGGCG1262640.22131623600089007No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1227700.21519193351889118No Hit
GCCCGAGGTGGGATCCCGAGGCCT1149640.20150953364067611No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT1095650.19204613664573847No Hit
CCGAGCGCACGGGGTCGGCGGCGA1074880.18840555958360003No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1051290.1842706913652155No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1033040.18107182129376503No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCT1022020.17914022961226453No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG987280.17305098324063767No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC914300.16025900856587294No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC902550.15819946208151442No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA901860.1580785185007308No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG894200.15673586947348087No Hit
GTTGGCCCCGGATAGCCGGGTCCCCG889280.15587348915832822No Hit
GAGGGCGCACCACCGGCCCGTCTCGC856360.1501032533910871No Hit
AGCCGAGCGCACGGGGTCGGCGGCG843850.14791049368731474No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCG842570.14768613458093358No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC827230.14499733091539654No Hit
GGCCCGAGGTGGGATCCCGAGGC823600.14436106251214365No Hit
GGGCCCGAGGTGGGATCCCGAGGC823080.1442699166251763No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT774080.13568116958402157No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC740120.12972864204284576No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC722240.12659462577558359No Hit
TCGAAGCCGAGCGCACGGGGTCGGCGGCGA694100.1216622310462347No Hit
GCCCGAGGTGGGATCCCGAGGCC665990.11673509473344165No Hit
TCGCTTCTGGCGCCAAGCGTCC662560.11613388244056083No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG656050.11499280604795026No Hit
GAGGGCGCACCACCGGCCCGTCTCG652710.11440736900473686No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC633950.11111910585183762No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA625790.10968881654865757No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT619030.10850392001808196No Hit
GGTTGGCCCCGGATAGCCGGGT614460.10770288789608037No Hit
GCCGAGCGCACGGGGTCGGCGGCG610210.10695794555067407No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC598410.10488963503872255No Hit
ACGAAGCCGAGCGCACGGGGTCGGCGGCGA580760.10179593329838824No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT575350.100847665512824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)