FastQCFastQC Report
Tue 19 Sept 2023
SRR16902779_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16902779_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47750292
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length10-34
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC31180186.5298406970998215No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT19138164.007967113583306No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG18544473.8836348896044446No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC13835652.8975006058601696No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10417242.181607601478123No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC10398152.1776097201667377No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG9401991.9689911006198664No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC8733631.829021275932721No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC8407371.760694992189786No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA6429661.346517420249493No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA5929051.241678270784187No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG5760281.2063339843031744No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT4461060.9342476900455395No Hit
TCGCTTCTGGCGCCAAGCGTCCG3842890.8047887958465259No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCC3226860.6757780664461696No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG3043110.6372966263745571No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3016610.6317469220921204No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC2845300.5958707016912065No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2567850.5377663449681104No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC2490340.5215339834989909No Hit
AGCCGAGCGCACGGGGTCGGCGGCGA2479770.5193203844701096No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC2392880.5011236371078108No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG2293600.48033214121496887No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA2270410.4754756264108291No Hit
ACCCCGAGTGTTACAGCCCTCCGG2266650.47468819667113243No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG2052780.429898941769822No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2006720.4202529274585379No Hit
CGCTTCTGGCGCCAAGCGTCCG1984040.4155032182839845No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1923440.402812196415469No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1914250.4008876008548806No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1866980.39098818495183235No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1862870.39012745723104686No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCG1771840.37106369946386925No Hit
GGCCCGAGGTGGGATCCCGAGGCCT1767630.3701820294627727No Hit
CTCGCTTCTGGCGCCAAGCGTCCG1709280.3579622089012566No Hit
GGGCCCGAGGTGGGATCCCGAGGCCT1674030.3505800550916003No Hit
CGGTTGGCCCCGGATAGCCGGGT1535440.3215561488084722No Hit
CGGTTGGCCCCGGATAGCCGGGTCC1478720.3096776874160267No Hit
AAGCCGAGCGCACGGGGTCGGCGGCGA1478130.30955412796219134No Hit
GGTTGGCCCCGGATAGCCGGGTCCC1467290.30728398477647006No Hit
GCCGAGCGCACGGGGTCGGCGGCGA1432540.3000065423683692No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1374650.287883056296284No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1316470.2756988376112967No Hit
TGGCCCGAGGTGGGATCCCGAGGCCT1272420.2664737631342652No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT1238100.259286372531502No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC1218810.2552466066594944No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1145870.23997130740059136No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1136700.23805090029606518No Hit
GGCCCGAGGTGGGATCCCGAGGCC1132000.2370666131214444No Hit
GTTGGCCCCGGATAGCCGGGTCCC1084080.22703107239637402No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1052190.22035257920517012No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC1048640.2196091282541267No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1015050.21257461629763438No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC973870.20395058526553092No Hit
GGGCCCGAGGTGGGATCCCGAGGCC972850.20373697400635793No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC968550.2028364559529814No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC967260.20256630053696845No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG965880.20227729706867553No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC951130.19918831072279095No Hit
AACGATGCCGACTGGCGATGCGGCGGCG898850.18823968657615747No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCT898040.1880700541056377No Hit
TCGCTTCTGGCGCCAAGC882980.18491614669078882No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC860850.18028162005794646No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC853400.17872142017477086No Hit
TGGCCCGAGGTGGGATCCCGAGGCC786770.16476757880349716No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA785150.16442831386245763No Hit
CCGGGTTTCGCCCCCGCGGCG779250.1631927193241038No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCG768610.16096446069900475No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT717340.15022735358351316No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA698610.14630486448124758No Hit
CCGAGCGCACGGGGTCGGCGGCGA644050.13487875634352142No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT623860.13065050994871402No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG615140.1288243431055877No Hit
AGCCGAGCGCACGGGGTCGGCGGCG605290.12676152849494618No Hit
TCGAAGCCGAGCGCACGGGGTCGGCGGCGA596530.12492698473969542No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG594840.12457306020243814No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG591300.12383170347942585No Hit
ACGAAGCCGAGCGCACGGGGTCGGCGGCGA589560.12346730780201302No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT570180.11940869387772539No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC569230.11920974221477011No Hit
GCCGGGTTTCGCCCCCGCGGCG563200.1179469227120119No Hit
GTTGGCCCCGGATAGCCGGGTCCCCG555690.11637415746064968No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCGT554070.11603489251961015No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC551730.11554484316033083No Hit
ACGATGCCGACTGGCGATGCGGCGGCG531600.1113291621337101No Hit
GGGCCCGAGGTGGGATCCCGAGGC521770.10927053597913076No Hit
GCCCGAGGTGGGATCCCGAGGCCT518120.10850614274777629No Hit
TCGCTTCTGGCGCCAAGCGTCC517240.10832185068103876No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT511090.10703390044190725No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCG506980.10617317272112178No Hit
GGCCCGAGGTGGGATCCCGAGGC506130.1059951633384776No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT499680.10464438625841282No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC499010.10450407298032859No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC493540.10335853024731241No Hit
TCGGTTGGCCCCGGATAGCCGGGT489750.10256481782352242No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCC485030.10157634219283937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)