FastQCFastQC Report
Tue 19 Sept 2023
SRR16902780_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16902780_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182532890
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length10-37
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC24497611.34209292363694No Hit
TCGCTTCTGGCGCCAAGCGT23230811.27269173243244No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG18047610.9887319485271943No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG17041540.9336147584142233No Hit
TTGGCCCCGGATAGCCGGGTCCC16520260.9050566174676793No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC15948450.8737302082928725No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC15657620.8577971893174978No Hit
GTTGGCCCCGGATAGCCGGGTCCC13978170.7657891134030694No Hit
TCGCTTCTGGCGCCAAGCGTCCG13794510.7557273650792469No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC13605520.7453736145852947No Hit
TCGGTTGGCCCCGGATAGCCGGGT12469540.6831393509410824No Hit
TTGGCCCCGGATAGCCGGGT11033880.6044872241928565No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG9839100.5390316232871786No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC9802560.5370297922746964No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC9748200.5340516988472598No Hit
CGGTTGGCCCCGGATAGCCGGGT9349870.5122293302867226No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC8569300.46946607814076685No Hit
GTTGGCCCCGGATAGCCGGGT8445510.4626842866510249No Hit
ACTGTGGTAATTCTAGAGCT8253710.452176591298149No Hit
ACGATGCCGACTGGCGATGCGGCGGCG8195410.4489826463603354No Hit
TTCGGTTGGCCCCGGATAGCCGGGT7990350.43774850658421066No Hit
TCGCTTCTGGCGCCAAGCGTCC7697770.42171961447605416No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG7228210.39599493548806464No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA6969850.3818407740106454No Hit
ATTGATCATCGACACTTCGAACGCA6696840.366884017450225No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG6686780.36633288389834845No Hit
TTACCCTACGCCGGCAGGCGCGGGTA6175180.33830505833770563No Hit
GGTTGGCCCCGGATAGCCGGGTCCC5896190.3230206895864082No Hit
AGGGCGCACCACCGGCCCGTCTCG5785540.31695876836223874No Hit
ACCGGGGTCCGGTGCGGAGAGCCGTT5371470.2942740894531391No Hit
GAGGGCGCACCACCGGCCCGTCTCG5310800.2909503049012153No Hit
GAGGGCGCACCACCGGCCCGTCTCGC5302950.2905202454198802No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT5183740.2839893676147899No Hit
TCGCTTCTGGCGCCAAGCG5154060.282363359282812No Hit
ACCCTACGCCGGCAGGCGCGGGT5148440.2820554695649644No Hit
TAACTGTGGTAATTCTAGAGCT5092220.2789754766935427No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC4986900.27320555763950266No Hit
TTTGGTGACTCTAGATAACCTCG4619820.25309520930721036No Hit
TCGCTTCTGGCGCCAAGCGTC4619170.2530595992864628No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT4344380.2380053260538416No Hit
TTACCCTACGCCGGCAGGCGCGGGT4293250.23520418703719642No Hit
GGTTGGCCCCGGATAGCCGGGT4252640.23297938251018763No Hit
TGGCCCGAGGTGGGATCCCGAGGCCT4218190.23109205141057043No Hit
ACCGGGGTCCGGTGCGGAGAGCCGTTC4136440.2266134064934818No Hit
AGGGCGCACCACCGGCCCGTCTCGC4129710.22624470581712697No Hit
ACGTACGCAGTTTTATCCGGTAA3924840.21502097512399No Hit
ATTGATCATCGACACTTCGAACG3909660.2141893441779177No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA3794500.20788034419440793No Hit
ACCCTACGCCGGCAGGCGCGGGTA3679750.2015938059162927No Hit
TCCGGTGCGGAGAGCCGTT3644860.1996823695718618No Hit
ACCGGGGTCCGGTGCGGAGAGCCGT3575930.19590606383320835No Hit
TTTGGTGACTCTAGATAACCTC3416150.18715257288700135No Hit
AACTGTGGTAATTCTAGAGCT3408420.1867290875633427No Hit
TCCGGTGCGGAGAGCCGTTC3352820.1836830611732494No Hit
TTGGCCCCGGATAGCCGGGTCC3339060.1829292244263486No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG3312300.18146318726449792No Hit
ACGATGCCGACTGGCGATGCGGCGGC3282420.17982622200305928No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC3268720.17907567233499672No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT3106120.1701676886833929No Hit
GTCCGGTGCGGAGAGCCGTT3103500.17002415290745684No Hit
TCGGTTGGCCCCGGATAGCCGGGTCC3054210.16732381764185075No Hit
CCGGGGTCCGGTGCGGAGAGCCGTT2990840.1638521145422066No Hit
AGTGTGCTTGGAATAATA2985990.163586409002783No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG2969940.16270711541355642No Hit
GCCCGAGGTGGGATCCCGAGGCCT2968120.16260740735546345No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2955350.16190780740939345No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCT2954800.16187767585337634No Hit
TGGCCCGAGGTGGGATCCCGAGGCC2935000.16079293983676038No Hit
GTTGGCCCCGGATAGCCGGGTCCCCG2920620.16000513660853122No Hit
TCGGGACCGGGGTCCGGTGCGGAGAGCCGTT2879690.15776280099438517No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT2861990.15679311273710728No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT2799630.15337674213124003No Hit
CTCGGTTGGCCCCGGATAGCCGGGT2784560.1525511374963712No Hit
ACCCCGAGTGTTACAGCCCTCCGG2716810.14883947764153627No Hit
TCGGGACCGGGGTCCGGTGCGGAGAGCCGTTC2690510.14739864141744538No Hit
GTCCGGTGCGGAGAGCCGT2632090.14419812232195522No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2614750.14324815653770673No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2612510.14312543892774612No Hit
TCCGGTGCGGAGAGCCGT2553830.139910675823957No Hit
GTTGGCCCCGGATAGCCGGGTCC2514610.1377620219567005No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2424330.13281606399811013No Hit
TGAGGGCGCACCACCGGCCCGTCTCG2357830.129172884952405No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG2308340.12646159275733815No Hit
TTACCCTACGCCGGCAGGCGCGGG2306980.12638708563700493No Hit
ATCCCACTTCTGACACCA2297640.12587539703118708No Hit
ATAACCTCGGGCCGATCGCAC2287540.12532207209341834No Hit
AAACTGTGGTAATTCTAGAGCT2262030.12392451574069747No Hit
CCGGGGTCCGGTGCGGAGAGCCGTTC2243830.12292743515976763No Hit
ACCGGGGTCCGGTGCGGAGAGCCG2150390.11780835771569717No Hit
TCGGGACCGGGGTCCGGTGCGGAGAGCCGT2138990.11718381273643343No Hit
TAAGGCTGCGTTCAGGTCGCAGTC2126320.11648969125509381No Hit
CTGGATTGAGGCTCCAGT2118160.1160426485330945No Hit
ACCCTACGCCGGCAGGCGCGGG2104100.11527237639200255No Hit
CCGGGGTCCGGTGCGGAGAGCCGT2090870.1145475755081728No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCC2081470.11403259982351674No Hit
TTGGCCCCGGATAGCCGGGTCCCCG2062590.1129982656824203No Hit
ATAAGCTTGCGTTGATTAAG2028900.11115257091475406No Hit
TACCCTACGCCGGCAGGCGCGGGTA2013250.11029519118444901No Hit
GTCCGGTGCGGAGAGCCGTTC2010240.11013028939606447No Hit
GTCAGGATGGCCGAGCGG2010190.11012755016369927No Hit
CCGAGCGCACGGGGTCGGCGGCGA1998950.10951177072800414No Hit
GCCCGAGGTGGGATCCCGAGGCC1997500.10943233298941357No Hit
TGACCGGGGTCCGGTGCGGAGAGCCGTT1994600.10927345751223244No Hit
TCGATGCCGACTGGCGATGCGGCGGCG1937050.10612060105989667No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG1924320.1054231924997188No Hit
CCGAGGGCGCACCACCGGCCCGTCTCG1904620.10434393494783323No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCC1896590.10390401422998342No Hit
GGCCCGAGGTGGGATCCCGAGGCCT1856260.1016945494042197No Hit
ATTGATCATCGACACTTCGAACGCAC1853710.10155484855359491No Hit
ATCCCACCGCTGCCACCA1853520.10154443947060719No Hit
CGGTTGGCCCCGGATAGCCGGGTCC1848630.10127654254529143No Hit
CTCGCTTCTGGCGCCAAGCGT1838130.10070130374860115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)