FastQCFastQC Report
Tue 19 Sept 2023
SRR16902781_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16902781_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73929929
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length10-34
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC55566797.5161427518752255No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCG26180903.5413127476424333No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT23349593.158340649833439No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC19962012.700125682522974No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC17668172.3898535057432557No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG12917501.747262600509193No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG10748321.4538523363115905No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC10592931.4328337850831698No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT9677131.3089597313153107No Hit
CGGTTGGCCCCGGATAGCCGGGTCCC9496931.284585299682893No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA8263791.1177868167572567No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA7563321.0230389914211875No Hit
TCGCTTCTGGCGCCAAGCGTCCG7408711.0021259455017197No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCCGT6607640.8937706405750775No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC6250490.8454613827642118No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCCG5733810.7755735840081762No Hit
CGGTTGGCCCCGGATAGCCGGGTCCCC4885680.6608527921080515No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCC4165360.5634199919223513No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG4114300.5565134520824442No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3690050.4991280324373097No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3438470.465098512403549No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3395120.459234851963675No Hit
ACCCCGAGTGTTACAGCCCTCCGG3385280.457903861912271No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3352060.4534104178566166No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC3267950.4420334287078782No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCGA3221600.43576397861818594No Hit
CTCGCTTCTGGCGCCAAGCGTCCG3212410.4345209096575759No Hit
AGCCGAGCGCACGGGGTCGGCGGCGA3189150.4313746872393182No Hit
CGCTTCTGGCGCCAAGCGTCCG3036950.41078762567187094No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC2892860.3912975487910992No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG2831140.3829491030621712No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG2760940.37345362525642356No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCG2712150.36685413291821234No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG2646850.3580214448738345No Hit
GGCCCGAGGTGGGATCCCGAGGCCT2540120.34358480176546635No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC2519900.3408497795256911No Hit
GGGCCCGAGGTGGGATCCCGAGGCCT2457370.3323917705913122No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCC2260740.30579496431005637No Hit
CGGTTGGCCCCGGATAGCCGGGTCC2247080.30394726877121714No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC2226200.30112297280848194No Hit
GCCGAGCGCACGGGGTCGGCGGCGA2150400.2908700209897402No Hit
AAGCCGAGCGCACGGGGTCGGCGGCGA2040050.2759437250372579No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2009830.2718560706314218No Hit
GGCCCGAGGTGGGATCCCGAGGCC1881640.2545166788946869No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1845800.24966884521152455No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG1780730.24086726770696615No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1764070.23861378251830864No Hit
CGGTTGGCCCCGGATAGCCGGGT1757620.23774133477119935No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCC1747450.23636570785831543No Hit
GGGCCCGAGGTGGGATCCCGAGGCC1738360.23513616521936603No Hit
GGTTGGCCCCGGATAGCCGGGTCCC1732640.2343624596203792No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1731980.23427318589741916No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1680850.22735717763234967No Hit
TGGCCCGAGGTGGGATCCCGAGGCCT1671670.22611546130390575No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA1603900.21694867311451088No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCGT1589450.21499411963455287No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1547080.20926301714695278No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC1534360.20754246903172327No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT1475540.19958628663095296No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCT1390280.18805374478311754No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1292620.1748439390493666No Hit
GGTTGGCCCCGGATAGCCGGGTCCCCG1258000.1701611264904637No Hit
ACGATGCCGACTGGCGATGCGGCGGCG1238830.16756813062812492No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC1222510.16536063493311348No Hit
GTTGGCCCCGGATAGCCGGGTCCC1216920.16460451355228542No Hit
CCGGGTTTCGCCCCCGCGGCG1195410.1616950017630884No Hit
TGGCCCGAGGTGGGATCCCGAGGCC1157950.1566280416690242No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1132890.1532383454608755No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1125280.15220899238250316No Hit
GAAGCCGAGCGCACGGGGTCGGCGGCGA1118560.15130002356691022No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC1103350.14924267004233158No Hit
TCGCTTCTGGCGCCAAGCGTCC1039880.14065751368434293No Hit
CGAAGCCGAGCGCACGGGGTCGGCGGCG1022610.13832151793355568No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC994250.13448545311060695No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGC965430.13058716720801938No Hit
GGGGCCCGAGGTGGGATCCCGAGGCC955950.1293048719145936No Hit
AGCCGAGCGCACGGGGTCGGCGGCG954780.12914661395116447No Hit
TTCGGTTGGCCCCGGATAGCCGGGTCCCC946630.12804421873582483No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA931130.1259476388784304No Hit
GCCGGGTTTCGCCCCCGCGGCG929710.12575556511084976No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCGT929100.12567305454872005No Hit
TCGAAGCCGAGCGCACGGGGTCGGCGGCGA916790.12400796435229906No Hit
TCGGTTGGCCCCGGATAGCCGGGTCC915650.12385376428536811No Hit
ACGAAGCCGAGCGCACGGGGTCGGCGGCGA902620.12209128457299073No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAG872370.11799957227065644No Hit
CCGAGCGCACGGGGTCGGCGGCGA853640.11546609222362433No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGT851330.11515363419326427No Hit
GGGCCCGAGGTGGGATCCCGAGGC849220.11486822880622542No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCG845910.11442050755925927No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT840530.11369279145391849No Hit
GGCCCGAGGTGGGATCCCGAGGC836030.11308410697919105No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGC782960.10590568807390577No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCG780430.10556347213589234No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG770860.10426900315297205No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT768250.10391596615763016No Hit
GTTGGCCCCGGATAGCCGGGTCCCCG764930.10346689227849794No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGC743140.1005195067886512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)